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Assembly Name: uagpf v2.0

Name: Nucleic acid-binding, OB-fold

Term: IPR012340  Help

Source: InterPro from Sma3


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
uagpf_v2_unigene256 uagpf v2.0 363
AutoFact: Polynucleotide phosphorylase n=1 Tax=Pisum sativum RepID=O24288_PEA 0.0
FL-Next: tr=Polynucleotide phosphorylase; Pisum sativum (Garden pea). 0.0
Blast2go: polynucleotide phosphorylase 0.0
Internal
uagpf_v2_unigene283 uagpf v2.0 488
AutoFact: replication protein A1 [Oryza sativa Indica Group] gb|EAY89034.1| hypothetical protein OsI_10518 [Oryza sativa Indica Group] 0.0
Blast2go: replication protein a 70 kda dna-binding subunit-like 0.0
Putative coding
uagpf_v2_unigene333 uagpf v2.0 546
AutoFact: putative U1 snRNP 70K protein [Trifolium pratense] 0.0
Blast2go: u1 small nuclear ribonucleoprotein 70 kda-like 0.0
unknown
uagpf_v2_unigene365 uagpf v2.0 699
AutoFact: single-strand DNA-binding protein [Arabidopsis thaliana] dbj|BAB02216.1| unnamed protein product [Arabidopsis thaliana] gb|AEE76119.1| single-strand DNA-binding protein [Arabidopsis thaliana] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: single-stranded dna-binding protein 0.0
C-terminus
uagpf_v2_unigene553 uagpf v2.0 427
AutoFact: methionyl-tRNA synthetase [Oryza sativa] 0.0
Blast2go: methionyl-trna synthetase 0.0
unknown
uagpf_v2_unigene684 uagpf v2.0 900
AutoFact: ATP-dependent RNA helicase, putative n=1 Tax=Ricinus communis RepID=B9R8Y0_RICCO 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: probable pre-mrna-splicing factor atp-dependent rna helicase-like 0.0
Putative C-terminus
uagpf_v2_unigene1206 uagpf v2.0 927
AutoFact: DUF707 domain containing protein 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: lysine ketoglutarate reductase trans-splicing related 1 0.0
N-terminus
uagpf_v2_unigene1575 uagpf v2.0 497
AutoFact: minichromosomal maintenance factor [Triticum aestivum] 0.0
Blast2go: minichromosome maintenance protein 2 0.0
Coding
uagpf_v2_unigene1755 uagpf v2.0 1040
AutoFact: small subunit ribosomal protein S17 [Arabidopsis thaliana] gb|AAD43160.1|AC007504_15 Putative ribosomal protein [Arabidopsis thaliana] dbj|BAC42717.1| unknown protein [Arabidopsis thaliana] gb|AAO50680.1| putative 40S ribosomal protein S17 [Arabidopsis th 1.0e-33
FL-Next: sp=30S ribosomal protein S17, chloroplastic; Thalassiosira pseudonana (Marine diatom) (Cyclotella nana). Plastid; Chloroplast. 0.0
Blast2go: 30s ribosomal protein s17 2.8026e-45
Complete
uagpf_v2_unigene2003 uagpf v2.0 760
AutoFact: minichromosomal maintenance factor [Triticum aestivum] 0.0
FL-Next: tr=DNA replication licensing factor MCM2, putative, expressed; Oryza sativa subsp. japonica (Rice). 0.0
Blast2go: minichromosome maintenance protein 2 0.0
C-terminus
uagpf_v2_unigene2162 uagpf v2.0 1125
AutoFact: polyribonucleotide nucleotidyltransferase [Arabidopsis thaliana] emb|CAB43864.1| polynucleotide phosphorylase [Arabidopsis thaliana] emb|CAB43865.1| polynucleotide phosphorylase [Arabidopsis thaliana] emb|CAB87625.1| polynucleotide phosphorylase [Arabidop 3.0e-40
FL-Next: tr=Predicted protein; Physcomitrella patens subsp. patens (Moss). 0.0
Blast2go: polyribonucleotide nucleotidyltransferase 4.2039e-45
N-terminus
uagpf_v2_unigene2451 uagpf v2.0 558
AutoFact: Methionine-tRNA synthetase, putative n=1 Tax=Ricinus communis RepID=B9RWD7_RICCO 4.0e-34
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: methionyl-trna synthetase 3.49475e-39
Internal
uagpf_v2_unigene2658 uagpf v2.0 578
AutoFact: Unassigned protein
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: single-strand binding protein 0.0
C-terminus
uagpf_v2_unigene2835 uagpf v2.0 493
AutoFact: methionyl-tRNA synthetase [Oryza sativa] 0.0
FL-Next: sp=Probable methionyl-tRNA synthetase; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: methionyl-trna synthetase 0.0
Internal
uagpf_v2_unigene2851 uagpf v2.0 643
AutoFact: single-strand DNA-binding protein [Arabidopsis thaliana] dbj|BAB02216.1| unnamed protein product [Arabidopsis thaliana] gb|AEE76119.1| single-strand DNA-binding protein [Arabidopsis thaliana] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: single-stranded dna-binding protein 0.0
N-terminus
uagpf_v2_unigene2923 uagpf v2.0 676
AutoFact: RPA 70kDa subunit [Pisum sativum] 0.0
FL-Next: tr=Predicted protein; subsp. trichocarpa). 0.0
Blast2go: replication factor a1 0.0
Putative C-terminus
uagpf_v2_unigene3029 uagpf v2.0 471
AutoFact: Pectinesterase n=1 Tax=Vitis vinifera RepID=A5BYJ7_VITVI 0.0
FL-Next: sp=Pectinesterase; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: protein 0.0
Putative C-terminus
uagpf_v2_unigene3228 uagpf v2.0 401
AutoFact: asparaginyl-tRNA synthetase, cytoplasmic 1 [Arabidopsis thaliana] sp|Q9SW96.1|SYNC1_ARATH RecName: Full=Asparaginyl-tRNA synthetase, cytoplasmic 1; AltName: Full=Asparagine--tRNA ligase 1; Short=AsnRS 1; AltName: Full=Protein EMBRYO DEFECTIVE 2755 gb|AAD4 0.0
Blast2go: asparaginyl-trna cytoplasmic 1-like 0.0
Putative coding
uagpf_v2_unigene3277 uagpf v2.0 1110
AutoFact: DUF707 domain containing protein 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: uncharacterized protein 0.0
C-terminus
uagpf_v2_unigene3486 uagpf v2.0 906
AutoFact: [L] COG1241 Predicted ATPase involved in replication control, Cdc46/Mcm family 0.0
FL-Next: sp=Protein PROLIFERA; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: minichromosome maintenance protein 0.0
Putative C-terminus

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain