Sustainpine_db
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Assembly Name: uagpf v2.0

Name: Nucleic acid-binding, OB-fold

Term: IPR012340  Help

Source: InterPro from Sma3

UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
 Full-Length
uagpf_v2_unigene32781 uagpf v2.0 205
• AutoFact: ATP-dependent RNA helicase, putative n=1 Tax=Ricinus communis RepID=B9R8Y0_RICCO 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: probable pre-mrna-splicing factor atp-dependent rna helicase-like 0.0
Internal
uagpf_v2_unigene33533 uagpf v2.0 326
• AutoFact: DUF707 domain containing protein 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: af385745_1 at1g67850 f12a21_2 9.80909e-45
Internal
uagpf_v2_unigene33592 uagpf v2.0 331
• AutoFact: putative replication licensing factor MCM4 [Oryza sativa Japonica Group] 0.0
• FL-Next: tr=Predicted protein; Physcomitrella patens subsp. patens (Moss). 0.0
• Blast2go: dna replication licensing factor mcm4 0.0
Internal
uagpf_v2_unigene33890 uagpf v2.0 785
• AutoFact: putative 30S ribosomal protein S1 [Oryza sativa Japonica Group] 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: 30s ribosomal protein s1-like 0.0
C-terminus
uagpf_v2_unigene34030 uagpf v2.0 540
• AutoFact: kinesin-like protein [Arabidopsis thaliana] 3.00004e-41
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: kinesin 5 0.0
Complete
uagpf_v2_unigene35248 uagpf v2.0 387
• AutoFact: RPA 70kDa subunit [Pisum sativum] 0.0
• FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
• Blast2go: replication factor a1 0.0
Internal
uagpf_v2_unigene36082 uagpf v2.0 621
• AutoFact: S28 ribosomal protein (Fragment) n=1 Tax=Triticum aestivum RepID=Q7X9K4_WHEAT 3.0e-19
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: 40s ribosomal protein s28 1.64568e-25
Complete
uagpf_v2_unigene36090 uagpf v2.0 496
• AutoFact: Putative glycine-rich protein n=1 Tax=Picea glauca RepID=Q3HRT2_PICGL 2.0e-40
• Blast2go: protein 0.0
unknown
uagpf_v2_unigene36106 uagpf v2.0 684
• AutoFact: replication protein A 30kDa [Oryza sativa Japonica Group] 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: replication protein a 32 kda subunit 0.0
C-terminus
uagpf_v2_unigene36230 uagpf v2.0 501
• AutoFact: replication protein A1 [Oryza sativa Indica Group] gb|EAY89034.1| hypothetical protein OsI_10518 [Oryza sativa Indica Group] 0.0
• Blast2go: replication protein a 70 kda dna-binding subunit-like 0.0
unknown
uagpf_v2_unigene36313 uagpf v2.0 510
• AutoFact: DUF707 domain containing protein 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: lysine ketoglutarate reductase trans-splicing related 1 0.0
C-terminus
uagpf_v2_unigene36329 uagpf v2.0 519
• AutoFact: methionyl-tRNA synthetase [Oryza sativa] 0.0
• FL-Next: sp=Probable methionyl-tRNA synthetase; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Blast2go: methionyl-trna synthetase 0.0
C-terminus
uagpf_v2_unigene36434 uagpf v2.0 503
• AutoFact: DUF707 domain containing protein 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: uncharacterized protein 0.0
C-terminus
uagpf_v2_unigene36550 uagpf v2.0 439
• AutoFact: Single-stranded DNA-binding protein [Arabidopsis thaliana] sp|Q84J78.1|SSB_ARATH RecName: Full=Single-stranded DNA-binding protein, mitochondrial; Flags: Precursor gb|AAO42186.1| unknown protein [Arabidopsis thaliana] gb|AAO50548.1| unknown protein [Arabi 0.0
• Blast2go: single-stranded dna-binding protein 0.0
unknown
uagpf_v2_unigene36596 uagpf v2.0 587
• AutoFact: Elongation factor EF-P n=2 Tax=Arabidopsis RepID=Q8VZW6_ARATH 5.0e-40
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: elongation factor p 0.0
Putative N-terminus
uagpf_v2_unigene36716 uagpf v2.0 660
• AutoFact: Nucleic acid-binding, OB-fold-like protein [Arabidopsis thaliana] emb|CAB75817.1| putative protein [Arabidopsis thaliana] gb|AAK76594.1| unknown protein [Arabidopsis thaliana] gb|AAM44914.1| unknown protein [Arabidopsis thaliana] gb|AAM63861.1| unknown [A 0.0
• FL-Next: tr=Multisynthetase complex auxiliary component p43; Zea mays (Maize). 0.0
• Blast2go: protein 0.0
C-terminus
uagpf_v2_unigene36845 uagpf v2.0 786
• AutoFact: Predicted protein (Fragment) n=1 Tax=Physcomitrella patens subsp. patens RepID=A9TK03_PHYPA 0.0
• FL-Next: sp=Translation initiation factor IF-2, chloroplastic; Rhodomonas salina (Cryptomonas salina). Plastid; Chloroplast. 0.0
• Blast2go: eukaryotic translation initiation factor 5b 0.0
Internal
uagpf_v2_unigene36926 uagpf v2.0 414
• AutoFact: 40S ribosomal protein S11-1 n=11 Tax=core eudicotyledons RepID=RS111_ARATH 0.0
• Blast2go: 40s ribosomal protein s11 0.0
unknown
uagpf_v2_unigene37188 uagpf v2.0 341
• AutoFact: Eukaryotic translation initiation factor 5A 4 n=1 Tax=Picea abies RepID=Q3ZDK5_PICAB 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: eukaryotic translation initiation factor 5a isoform iv 0.0
N-terminus
uagpf_v2_unigene37445 uagpf v2.0 262
• AutoFact: Nucleic acid-binding, OB-fold-like protein [Arabidopsis thaliana] dbj|BAB10462.1| unnamed protein product [Arabidopsis thaliana] gb|AED97786.1| Nucleic acid-binding, OB-fold-like protein [Arabidopsis thaliana] 5.0e-38
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: soss complex subunit b1 0.0
Internal

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain