Sustainpine_db
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Assembly Name: uagpf v2.0

Name: Nucleic acid-binding, OB-fold

Term: IPR012340  Help

Source: InterPro from Sma3


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
uagpf_v2_unigene27894 uagpf v2.0 341
AutoFact: Ribosomal protein L2 n=1 Tax=Cycas taitungensis RepID=B0BLF2_CYCTA 0.0
FL-Next: sp=50S ribosomal protein L2, chloroplastic 2; Cryptomeria japonica (Japanese cedar) (Cupressus japonica). Plastid; Chloroplast. 0.0
Blast2go: ribosomal protein l2 0.0
Internal
uagpf_v2_unigene28148 uagpf v2.0 463
AutoFact: DNA replication licensing factor MCM5 [Aspergillus niger CBS 513.88] emb|CAK44374.1| unnamed protein product [Aspergillus niger] 0.0
FL-Next: tr=Os02g0797400 protein; Oryza sativa subsp. japonica (Rice). 0.0
Putative N-terminus
uagpf_v2_unigene28256 uagpf v2.0 389
AutoFact: Kinesin heavy chain, putative n=1 Tax=Ricinus communis RepID=B9T5B8_RICCO 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: kinesin heavy 0.0
Internal
uagpf_v2_unigene28279 uagpf v2.0 537
AutoFact: Helicase domain-containing protein n=4 Tax=Arabidopsis RepID=D7MLJ1_ARALL 0.0
FL-Next: sp=Probable pre-mRNA-splicing factor ATP-dependent RNA helicase; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: helicase domain-containing protein 0.0
Internal
uagpf_v2_unigene28416 uagpf v2.0 366
AutoFact: ATP-dependent RNA helicase, putative n=1 Tax=Ricinus communis RepID=B9R8Y0_RICCO 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: probable pre-mrna-splicing factor atp-dependent rna helicase-like 0.0
N-terminus
uagpf_v2_unigene28710 uagpf v2.0 425
AutoFact: exoribonuclease-like [Oryza sativa Japonica Group] gb|EEC74235.1| hypothetical protein OsI_09429 [Oryza sativa Indica Group] gb|EEE58039.1| hypothetical protein OsJ_08863 [Oryza sativa Japonica Group] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: exosome complex component csl4 0.0
N-terminus
uagpf_v2_unigene28783 uagpf v2.0 508
AutoFact: Unassigned protein
Blast2go: protein rrp5 homolog 0.0
unknown
uagpf_v2_unigene29276 uagpf v2.0 265
AutoFact: Ribosomal protein S3 n=8 Tax=Pinaceae RepID=D2DWK4_9CONI 0.0
FL-Next: tr=Ribosomal protein S3; Cathaya argyrophylla. Mitochondrion. 0.0
Blast2go: ribosomal protein s3 0.0
Internal
uagpf_v2_unigene29460 uagpf v2.0 431
AutoFact: Nucleic acid-binding, OB-fold-like protein [Arabidopsis thaliana] emb|CAB75817.1| putative protein [Arabidopsis thaliana] gb|AAK76594.1| unknown protein [Arabidopsis thaliana] gb|AAM44914.1| unknown protein [Arabidopsis thaliana] gb|AAM63861.1| unknown [A 0.0
FL-Next: sp=Probable methionyl-tRNA synthetase; Oryza sativa subsp. japonica (Rice). 0.0
Blast2go: protein 0.0
Internal
uagpf_v2_unigene30009 uagpf v2.0 591
AutoFact: replication factor A1 [Arabidopsis thaliana] gb|AAD25150.1| putative replication protein A1 [Arabidopsis thaliana] dbj|BAC43293.1| putative replication protein A1 [Arabidopsis thaliana] gb|AAO64881.1| At2g06510 [Arabidopsis thaliana] gb|AEC06010.1| replic 7.0e-22
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Blast2go: replication protein a 70 kda dna-binding subunit-like 2.11561e-32
N-terminus
uagpf_v2_unigene30128 uagpf v2.0 259
AutoFact: [L] COG1241 Predicted ATPase involved in replication control, Cdc46/Mcm family 0.0
FL-Next: sp=Protein PROLIFERA; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: minichromosome maintenance protein 0.0
Internal
uagpf_v2_unigene30464 uagpf v2.0 397
AutoFact: replication licensing factor MCM7 homologue [Zea mays] emb|CAC44902.1| replication licensing factor MCM7 homologue [Zea mays] 0.0
FL-Next: sp=Protein PROLIFERA; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: protein prolifera 0.0
N-terminus
uagpf_v2_unigene30634 uagpf v2.0 378
AutoFact: Unassigned protein
Blast2go: minichromosome maintenance family protein 0.0
unknown
uagpf_v2_unigene31046 uagpf v2.0 409
AutoFact: Lysyl-tRNA synthetase n=1 Tax=Oryza sativa Japonica Group RepID=Q6K1T2_ORYSJ 0.0
FL-Next: sp=Lysyl-tRNA synthetase; Solanum lycopersicum (Tomato) (Lycopersicon esculentum). 0.0
Blast2go: lysyl-trna synthetase 0.0
C-terminus
uagpf_v2_unigene31260 uagpf v2.0 273
AutoFact: Kinesin heavy chain, putative n=1 Tax=Ricinus communis RepID=B9T5B8_RICCO 0.0
Blast2go: kinesin heavy 0.0
Putative coding
uagpf_v2_unigene31316 uagpf v2.0 291
AutoFact: replication factor C1 [Arabidopsis thaliana] emb|CAC34494.1| replication factor C large subunit-like protein [Arabidopsis thaliana] gb|AAT47816.1| At5g22010 [Arabidopsis thaliana] gb|AED92968.1| replication factor C1 [Arabidopsis thaliana] 0.0
FL-Next: tr=Predicted protein; subsp. trichocarpa). 0.0
Blast2go: replication factor c subunit 1-like 0.0
Internal
uagpf_v2_unigene31366 uagpf v2.0 486
AutoFact: small subunit ribosomal protein S1 [Arabidopsis thaliana] gb|AAF43225.1|AC012654_9 Contains S1 RNA binding domain PF|00575. EST gb|AI997850 comes from this gene [Arabidopsis thaliana] gb|AEE35223.1| small subunit ribosomal protein S1 [Arabidopsis thaliana 5.04467e-44
FL-Next: tr=RIBOSOMAL PROTEIN; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: protein 0.0
Internal
uagpf_v2_unigene31649 uagpf v2.0 478
AutoFact: Pectinesterase n=2 Tax=Zea mays RepID=C0HGE0_MAIZE 0.0
FL-Next: sp=Pectinesterase; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: protein 0.0
Internal
uagpf_v2_unigene31711 uagpf v2.0 429
AutoFact: RecName: Full=40S ribosomal protein S23; AltName: Full=S12 gb|AAA79921.1| putative 40S ribosomal protein s12 [Fragaria x ananassa] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: 40s ribosomal protein s23 0.0
N-terminus
uagpf_v2_unigene32372 uagpf v2.0 432
AutoFact: Lysyl-tRNA synthetase n=1 Tax=Ricinus communis RepID=B9SBP3_RICCO 5.0e-29
FL-Next: sp=Lysyl-tRNA synthetase; Ricinus communis (Castor bean). 0.0
Blast2go: lysyl-trna synthetase 3.15097e-34
Putative N-terminus

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain