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Assembly Name: uagpf v2.0

Name: Nucleic acid-binding, OB-fold

Term: IPR012340  Help

Source: InterPro from Sma3


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
uagpf_v2_unigene20016 uagpf v2.0 644
AutoFact: Putative glycine-rich protein n=1 Tax=Picea glauca RepID=Q3HRT2_PICGL 2.0e-40
Blast2go: protein 0.0
unknown
uagpf_v2_unigene20037 uagpf v2.0 876
AutoFact: Translation initiation factor n=4 Tax=Magnoliophyta RepID=B5M1Y2_RHEAU 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: protein 0.0
Complete
uagpf_v2_unigene25309 uagpf v2.0 333
AutoFact: exosome complex component RRP4 [Arabidopsis thaliana] gb|AAC72108.1| Similar to hypothetical protein SPAC2F7.14c gi|1052797 from Schizosaccharomyces pombe cosmid gb|Z50142 [Arabidopsis thaliana] gb|AAQ65156.1| At1g03360 [Arabidopsis thaliana] dbj|BAD43995 0.0
Blast2go: exosome complex component rrp4-like 0.0
unknown
uagpf_v2_unigene25333 uagpf v2.0 655
AutoFact: DNA replication licensing factor MCM3 homolog 1 n=9 Tax=Poaceae RepID=MCM31_MAIZE 0.0
FL-Next: sp=DNA replication licensing factor MCM3 homolog 3; Zea mays (Maize). 0.0
Blast2go: dna replication licensing factor mcm3 homolog 1-like 0.0
Internal
uagpf_v2_unigene25661 uagpf v2.0 284
AutoFact: transmembrane protein G1P-related 1 [Arabidopsis thaliana] gb|AAB18126.1| G1p [Arabidopsis thaliana] gb|AAC14406.1| putative transmembrane protein G1p [Arabidopsis thaliana] gb|AAO42853.1| At3g51790 [Arabidopsis thaliana] dbj|BAE99476.1| Cytochrome C Matu 0.0
FL-Next: tr=At3g51790; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: cytochrome c-type biogenesis protein 0.0
Internal
uagpf_v2_unigene25685 uagpf v2.0 279
AutoFact: RecName: Full=40S ribosomal protein S23; AltName: Full=S12 gb|AAA79921.1| putative 40S ribosomal protein s12 [Fragaria x ananassa] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: 40s ribosomal protein s23 0.0
N-terminus
uagpf_v2_unigene25828 uagpf v2.0 527
AutoFact: 30S ribosomal protein S1, chloroplastic n=1 Tax=Spinacia oleracea RepID=RR1_SPIOL 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: ribosomal protein s1 0.0
C-terminus
uagpf_v2_unigene25938 uagpf v2.0 421
AutoFact: Whole genome shotgun sequence of line PN40024, scaffold_56.assembly12x (Fragment) n=1 Tax=Vitis vinifera RepID=D7TKY5_VITVI 3.0e-31
FL-Next: sp=Probable pre-mRNA-splicing factor ATP-dependent RNA helicase; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: probable pre-mrna-splicing factor atp-dependent rna helicase-like 1.22473e-38
Putative N-terminus
uagpf_v2_unigene26207 uagpf v2.0 363
AutoFact: Lysyl-tRNA synthetase (Fragment) n=6 Tax=Magnoliophyta RepID=D7U9T8_VITVI 0.0
FL-Next: sp=Lysyl-tRNA synthetase; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: lysyl-trna synthetase 0.0
Internal
uagpf_v2_unigene26375 uagpf v2.0 363
AutoFact: monodehydroascorbate reductase (NADH) [Arabidopsis thaliana] sp|Q9LK94.1|MDAR2_ARATH RecName: Full=Probable monodehydroascorbate reductase, cytoplasmic isoform 2; Short=MDAR 2 dbj|BAB02528.1| cytosolic monodehydroascorbate reductase [Arabidopsis thaliana] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: monodehydroascorbate reductase 0.0
Internal
uagpf_v2_unigene26413 uagpf v2.0 334
AutoFact: DNA replication licensing factor MCM5 [Aspergillus niger CBS 513.88] emb|CAK44374.1| unnamed protein product [Aspergillus niger] 0.0
FL-Next: tr=Os02g0797400 protein; Oryza sativa subsp. japonica (Rice). 0.0
Putative N-terminus
uagpf_v2_unigene26445 uagpf v2.0 226
AutoFact: Nucleic acid-binding, OB-fold-like protein [Arabidopsis thaliana] dbj|BAB10462.1| unnamed protein product [Arabidopsis thaliana] gb|AED97786.1| Nucleic acid-binding, OB-fold-like protein [Arabidopsis thaliana] 5.0e-38
Blast2go: soss complex subunit b1 0.0
unknown
uagpf_v2_unigene26665 uagpf v2.0 346
AutoFact: DNA replication licensing factor MCM3 homolog 1 n=9 Tax=Poaceae RepID=MCM31_MAIZE 0.0
FL-Next: sp=DNA replication licensing factor MCM3 homolog 3; Zea mays (Maize). 0.0
Blast2go: dna replication licensing factor mcm3 homolog 1-like 0.0
Internal
uagpf_v2_unigene26931 uagpf v2.0 353
AutoFact: putative U1 snRNP 70K protein [Trifolium pratense] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: u1 small nuclear ribonucleoprotein 70 kda-like 0.0
N-terminus
uagpf_v2_unigene26946 uagpf v2.0 468
AutoFact: Pectinesterase n=1 Tax=Populus trichocarpa RepID=B9N5H3_POPTR 0.0
FL-Next: sp=Pectinesterase; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: probable pectinesterase 53-like 0.0
C-terminus
uagpf_v2_unigene27226 uagpf v2.0 562
AutoFact: Single-strand binding protein (ISS) [Ostreococcus tauri] emb|CAL50423.1| Single-strand binding protein (ISS) [Ostreococcus tauri] 1.0e-22
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: single-strand binding protein 0.0
N-terminus
uagpf_v2_unigene27385 uagpf v2.0 423
AutoFact: DNA replication licensing factor MCM3 homolog 1 n=9 Tax=Poaceae RepID=MCM31_MAIZE 0.0
FL-Next: sp=DNA replication licensing factor MCM3 homolog; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: dna replication licensing factor mcm3 homolog 1-like 0.0
Internal
uagpf_v2_unigene27602 uagpf v2.0 406
AutoFact: elongation factor Ts family protein [Arabidopsis thaliana] emb|CAB43920.1| putative protein [Arabidopsis thaliana] emb|CAB79664.1| putative protein [Arabidopsis thaliana] gb|AAL10483.1| AT4g29060/F19B15_90 [Arabidopsis thaliana] gb|AEE85580.1| elongation 0.0
Blast2go: protein 0.0
unknown
uagpf_v2_unigene27801 uagpf v2.0 530
AutoFact: exoribonuclease-like [Oryza sativa Japonica Group] gb|EEC74235.1| hypothetical protein OsI_09429 [Oryza sativa Indica Group] gb|EEE58039.1| hypothetical protein OsJ_08863 [Oryza sativa Japonica Group] 0.0
Blast2go: exosome complex component csl4 0.0
unknown
uagpf_v2_unigene27843 uagpf v2.0 503
AutoFact: putative 30S ribosomal protein S1 [Oryza sativa Japonica Group] 0.0
Blast2go: 30s ribosomal protein s1-like 0.0
unknown

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain