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Assembly Name: uagpf v2.0

Name: Nucleic acid-binding, OB-fold

Term: IPR012340  Help

Source: InterPro from Sma3

UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
 Full-Length
uagpf_v2_unigene13679 uagpf v2.0 659
• AutoFact: exoribonuclease-like [Oryza sativa Japonica Group] gb|EEC74235.1| hypothetical protein OsI_09429 [Oryza sativa Indica Group] gb|EEE58039.1| hypothetical protein OsJ_08863 [Oryza sativa Japonica Group] 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: exosome complex component csl4 0.0
C-terminus
uagpf_v2_unigene14171 uagpf v2.0 878
• AutoFact: OB-fold nucleic acid binding domain-containing protein n=2 Tax=Arabidopsis RepID=Q93VB0_ARATH 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: protein 0.0
Putative C-terminus
uagpf_v2_unigene14220 uagpf v2.0 496
• AutoFact: FAP multi-domain protein 2.0e-17
Putative coding
uagpf_v2_unigene14227 uagpf v2.0 617
• AutoFact: Eukaryotic translation initiation factor 5A n=3 Tax=Picea RepID=Q3ZDK6_PICAB 0.0
• FL-Next: tr=Eukaryotic translation initiation factor 5A; Picea abies (Norway spruce) (Picea excelsa). 0.0
• Blast2go: eukaryotic translation initiation factor 5a 0.0
N-terminus
uagpf_v2_unigene14343 uagpf v2.0 754
• AutoFact: methionyl-tRNA synthetase (ISS) [Ostreococcus tauri] emb|CAL49998.1| methionyl-tRNA synthetase (ISS) [Ostreococcus tauri] 1.0e-21
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: methionyl-trna synthetase 0.0
C-terminus
uagpf_v2_unigene14493 uagpf v2.0 502
• AutoFact: DUF707 domain containing protein 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: lysine ketoglutarate reductase trans-splicing related 1 0.0
C-terminus
uagpf_v2_unigene14515 uagpf v2.0 545
• AutoFact: RecName: Full=DNA-directed RNA polymerase II subunit RPB7; Short=RNA polymerase II subunit B7 gb|AAA34005.1| RNA polymerase II [Glycine max] gb|ACU13766.1| unknown [Glycine max] 0.0
• Blast2go: dna-directed rna polymerase ii subunit rpb7 0.0
unknown
uagpf_v2_unigene14711 uagpf v2.0 966
• AutoFact: putative replication licensing factor MCM4 [Oryza sativa Japonica Group] 0.0
• FL-Next: tr=Putative uncharacterized protein; Zea mays (Maize). 0.0
• Blast2go: dna replication licensing factor mcm4 0.0
Putative N-terminus
uagpf_v2_unigene15248 uagpf v2.0 1100
• AutoFact: minichromosomal maintenance factor [Triticum aestivum] 0.0
• FL-Next: sp=Protein PROLIFERA; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Blast2go: minichromosome maintenance protein 2 0.0
Internal
uagpf_v2_unigene15301 uagpf v2.0 793
• AutoFact: RecName: Full=DNA-directed RNA polymerase II subunit RPB7; Short=RNA polymerase II subunit B7 gb|AAA34005.1| RNA polymerase II [Glycine max] gb|ACU13766.1| unknown [Glycine max] 0.0
• FL-Next: sp=DNA-directed RNA polymerase II subunit RPB7; Glycine max (Soybean) (Glycine hispida). 0.0
• Blast2go: dna-directed rna polymerase ii subunit rpb7 0.0
N-terminus
uagpf_v2_unigene15613 uagpf v2.0 1064
• AutoFact: Predicted protein (Fragment) n=1 Tax=Physcomitrella patens subsp. patens RepID=A9TK03_PHYPA 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: eukaryotic translation initiation factor 5b 0.0
C-terminus
uagpf_v2_unigene15678 uagpf v2.0 621
• AutoFact: Eukaryotic translation initiation factor 5A n=3 Tax=Picea RepID=Q3ZDK6_PICAB 0.0
• FL-Next: tr=Eukaryotic translation initiation factor 5A 2; Picea abies (Norway spruce) (Picea excelsa). 0.0
• Blast2go: eukaryotic translation initiation factor 5a 0.0
C-terminus
uagpf_v2_unigene15684 uagpf v2.0 613
• AutoFact: Elongation factor P n=3 Tax=Andropogoneae RepID=B6TAH3_MAIZE 0.0
• Blast2go: elongation factor p 0.0
unknown
uagpf_v2_unigene15827 uagpf v2.0 676
• AutoFact: [L] COG1241 Predicted ATPase involved in replication control, Cdc46/Mcm family 0.0
• FL-Next: tr=Putative uncharacterized protein; Selaginella moellendorffii (Spikemoss). 0.0
• Blast2go: minichromosome maintenance protein 0.0
C-terminus
uagpf_v2_unigene16178 uagpf v2.0 2265
• AutoFact: Lysyl-tRNA synthetase (Fragment) n=6 Tax=Magnoliophyta RepID=D7U9T8_VITVI 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: lysyl-trna synthetase 0.0
C-terminus
uagpf_v2_unigene16523 uagpf v2.0 1165
• AutoFact: OB-fold nucleic acid binding domain-containing protein [Arabidopsis thaliana] gb|AAC98030.1| ESTs gb|234051 and gb|F13722 come from this gene [Arabidopsis thaliana] gb|AAM62726.1| unknown [Arabidopsis thaliana] gb|AAO22770.1| unknown protein [Arabidopsis 2.94273e-44
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: protein 0.0
Complete
uagpf_v2_unigene16556 uagpf v2.0 1162
• AutoFact: replication protein A 30kDa [Oryza sativa Japonica Group] 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: replication protein a 32 kda subunit 0.0
Complete
uagpf_v2_unigene16744 uagpf v2.0 431
• AutoFact: DNA replication licensing factor MCM5 [Aspergillus niger CBS 513.88] emb|CAK44374.1| unnamed protein product [Aspergillus niger] 0.0
unknown
uagpf_v2_unigene16773 uagpf v2.0 383
• AutoFact: kinesin-like protein [Arabidopsis thaliana] 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: protein 0.0
Complete
uagpf_v2_unigene16793 uagpf v2.0 401
• AutoFact: Eukaryotic translation initiation factor 5A 2 n=3 Tax=Picea RepID=Q3ZDK4_PICAB 0.0
• Blast2go: protein 0.0
unknown

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain