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Assembly Name: uagpf v2.0

Name: Nucleic acid-binding, OB-fold

Term: IPR012340  Help

Source: InterPro from Sma3


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
uagpf_v2_unigene44130 uagpf v2.0 293
AutoFact: aspartyl-tRNA synthetase [Arabidopsis thaliana] gb|AEE86274.1| aspartyl-tRNA synthetase [Arabidopsis thaliana] 0.0
FL-Next: tr=tRNA synthetase class II family protein; Arabidopsis lyrata subsp. lyrata (Lyre-leaved rock-cress). 0.0
Blast2go: aspartyl-trna synthetase 0.0
Internal
uagpf_v2_unigene44526 uagpf v2.0 219
AutoFact: small subunit ribosomal protein S1 [Arabidopsis thaliana] gb|AAF43225.1|AC012654_9 Contains S1 RNA binding domain PF|00575. EST gb|AI997850 comes from this gene [Arabidopsis thaliana] gb|AEE35223.1| small subunit ribosomal protein S1 [Arabidopsis thaliana 5.04467e-44
Blast2go: protein 0.0
Putative coding
uagpf_v2_unigene44977 uagpf v2.0 407
AutoFact: DNA replication licensing factor MCM8, putative n=1 Tax=Ricinus communis RepID=B9SGR4_RICCO 0.0
FL-Next: tr=Putative uncharacterized protein; Selaginella moellendorffii (Spikemoss). 0.0
Blast2go: dna replication licensing factor 0.0
Internal
uagpf_v2_unigene44979 uagpf v2.0 294
AutoFact: methionyl-tRNA synthetase [Oryza sativa] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: methionyl-trna synthetase 0.0
Internal
uagpf_v2_unigene45856 uagpf v2.0 411
AutoFact: [L] COG1241 Predicted ATPase involved in replication control, Cdc46/Mcm family 1.0e-37
Blast2go: at2g07360-like protein 0.0
unknown
uagpf_v2_unigene46040 uagpf v2.0 311
AutoFact: minichromosomal maintenance factor [Triticum aestivum] 0.0
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Blast2go: minichromosome maintenance protein 2 0.0
Internal
uagpf_v2_unigene46740 uagpf v2.0 372
AutoFact: methionyl-tRNA synthetase [Oryza sativa] 0.0
Blast2go: methionyl-trna synthetase 0.0
unknown
uagpf_v2_unigene47058 uagpf v2.0 487
AutoFact: RPA 70kDa subunit [Pisum sativum] 0.0
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Blast2go: replication factor a1 0.0
Internal
uagpf_v2_unigene47731 uagpf v2.0 380
AutoFact: Putative elongation factor P (EF-P); 66839-65711 n=1 Tax=Arabidopsis thaliana RepID=Q9C9Y5_ARATH 3.0e-28
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: elongation factor p 1.36316e-38
Internal
uagpf_v2_unigene47873 uagpf v2.0 377
AutoFact: mRNA capping enzyme-like protein [Arabidopsis thaliana] gb|AEE74723.1| mRNA capping enzyme-like protein [Arabidopsis thaliana] 0.0
FL-Next: tr=cDNA clone:J023105K02, full insert sequence; Oryza sativa subsp. japonica (Rice). 0.0
Blast2go: mrna-capping enzyme-like 0.0
Internal
uagpf_v2_unigene48405 uagpf v2.0 386
AutoFact: kinesin-like heavy chain [Arabidopsis thaliana] 5.0e-24
Blast2go: protein 3.08727e-34
Coding
uagpf_v2_unigene48523 uagpf v2.0 284
AutoFact: chloroplast polyprotein of elongation factor Ts precursor [Arabidopsis thaliana] 0.0
FL-Next: sp=Elongation factor Ts; Vitis vinifera (Grape). 0.0
Blast2go: protein 0.0
Internal
uagpf_v2_unigene49466 uagpf v2.0 308
AutoFact: polyribonucleotide phophorylase [Spinacia oleracea] 1.0e-18
Blast2go: polyribonucleotide nucleotidyltransferase 7.68769e-23
Coding
uagpf_v2_unigene49653 uagpf v2.0 287
AutoFact: OB-fold nucleic acid binding domain-containing protein n=2 Tax=Arabidopsis RepID=Q93VB0_ARATH 0.0
Blast2go: protein 0.0
unknown
uagpf_v2_unigene49961 uagpf v2.0 542
AutoFact: OB-fold nucleic acid binding domain-containing protein [Arabidopsis thaliana] gb|AEC09877.1| OB-fold nucleic acid binding domain-containing protein [Arabidopsis thaliana] 1.0e-32
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: rna binding protein 0.0
C-terminus
uagpf_v2_unigene50148 uagpf v2.0 428
AutoFact: OB-fold nucleic acid binding domain-containing protein [Arabidopsis thaliana] gb|AAC98030.1| ESTs gb|234051 and gb|F13722 come from this gene [Arabidopsis thaliana] gb|AAM62726.1| unknown [Arabidopsis thaliana] gb|AAO22770.1| unknown protein [Arabidopsis 0.0
Blast2go: protein 0.0
unknown
uagpf_v2_unigene50215 uagpf v2.0 495
AutoFact: putative pre-rRNA processing protein, 5' partial [Arabidopsis thaliana] 7.0e-28
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: protein rrp5 homolog 9.86014e-33
N-terminus
uagpf_v2_unigene50218 uagpf v2.0 491
AutoFact: elongation factor EF-P [Arabidopsis thaliana] gb|AAL36090.1| putative elongation factor P (EF-P) [Arabidopsis thaliana] gb|AAM51349.1| putative elongation factor P (EF-P) [Arabidopsis thaliana] gb|AAM64282.1| putative elongation factor P (EF-P) [Arabidops 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: elongation factor p 0.0
Putative N-terminus
uagpf_v2_unigene50299 uagpf v2.0 380
AutoFact: RecName: Full=40S ribosomal protein S23; AltName: Full=S12 gb|AAA79921.1| putative 40S ribosomal protein s12 [Fragaria x ananassa] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: 40s ribosomal protein s23 0.0
C-terminus
uagpf_v2_unigene51015 uagpf v2.0 625
AutoFact: S28 ribosomal protein (Fragment) n=1 Tax=Triticum aestivum RepID=Q7X9K4_WHEAT 4.0e-19
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: 40s ribosomal protein s28 2.37269e-25
Complete

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain