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Assembly Name: uagpf v2.0

Name: Nucleic acid-binding, OB-fold

Term: IPR012340  Help

Source: InterPro from Sma3


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
uagpf_v2_unigene37513 uagpf v2.0 557
AutoFact: replication licensing factor MCM7 homologue [Zea mays] emb|CAC44902.1| replication licensing factor MCM7 homologue [Zea mays] 0.0
FL-Next: sp=Protein PROLIFERA; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: protein prolifera 0.0
Internal
uagpf_v2_unigene37839 uagpf v2.0 388
AutoFact: putative polyribonucleotide nucleotidyltransferase [Oryza sativa Japonica Group] 0.0
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Blast2go: polyribonucleotide nucleotidyltransferase 0.0
Internal
uagpf_v2_unigene38017 uagpf v2.0 389
AutoFact: DUF707 domain containing protein 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: lysine ketoglutarate reductase trans-splicing related 1 0.0
Internal
uagpf_v2_unigene39036 uagpf v2.0 385
AutoFact: Pectinesterase n=1 Tax=Vitis vinifera RepID=A5BYJ7_VITVI 0.0
Blast2go: protein 0.0
Putative coding
uagpf_v2_unigene39166 uagpf v2.0 428
AutoFact: Elongation factor P n=3 Tax=Andropogoneae RepID=B6TAH3_MAIZE 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: elongation factor p 0.0
N-terminus
uagpf_v2_unigene39289 uagpf v2.0 447
AutoFact: Pectinesterase n=1 Tax=Ricinus communis RepID=B9RKG6_RICCO 0.0
FL-Next: sp=Pectinesterase; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: probable pectinesterase 53-like 0.0
Putative N-terminus
uagpf_v2_unigene39810 uagpf v2.0 215
AutoFact: Kinesin-related protein n=1 Tax=Gossypium hirsutum RepID=A4GU96_GOSHI 0.0
Blast2go: kinesin-4-like 0.0
Coding
uagpf_v2_unigene40193 uagpf v2.0 382
AutoFact: DNA ligase n=2 Tax=Selaginella moellendorffii RepID=D8RMH0_SELML 1.0e-31
FL-Next: sp=DNA ligase 1; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: dna ligase 1.32109e-36
Internal
uagpf_v2_unigene40327 uagpf v2.0 487
AutoFact: methionyl-tRNA synthetase [Oryza sativa] 0.0
FL-Next: sp=Probable methionyl-tRNA synthetase; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: methionyl-trna synthetase 0.0
Internal
uagpf_v2_unigene40329 uagpf v2.0 416
AutoFact: Unassigned protein
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: unknown [Picea sitchensis] 5.78246e-07
C-terminus
uagpf_v2_unigene40350 uagpf v2.0 268
AutoFact: replication licensing factor MCM7 homologue [Zea mays] emb|CAC44902.1| replication licensing factor MCM7 homologue [Zea mays] 0.0
FL-Next: sp=Protein PROLIFERA; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: protein prolifera 0.0
Internal
uagpf_v2_unigene40510 uagpf v2.0 376
AutoFact: Pectinesterase n=1 Tax=Ricinus communis RepID=B9RKG6_RICCO 0.0
FL-Next: sp=Pectinesterase; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: probable pectinesterase 53-like 0.0
Internal
uagpf_v2_unigene40807 uagpf v2.0 251
AutoFact: Lysyl-tRNA synthetase n=1 Tax=Oryza sativa Japonica Group RepID=Q6K1T2_ORYSJ 0.0
FL-Next: sp=Lysyl-tRNA synthetase; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: lysyl-trna synthetase 0.0
Internal
uagpf_v2_unigene40890 uagpf v2.0 294
AutoFact: replication protein A1 [Oryza sativa Indica Group] gb|EAY89034.1| hypothetical protein OsI_10518 [Oryza sativa Indica Group] 0.0
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Blast2go: replication protein a 70 kda dna-binding subunit-like 0.0
Internal
uagpf_v2_unigene41042 uagpf v2.0 386
AutoFact: plastocyanin-like domain-containing protein [Arabidopsis thaliana] gb|AAB95306.1| putative phytocyanin [Arabidopsis thaliana] gb|AEC07879.1| plastocyanin-like domain-containing protein [Arabidopsis thaliana] 4.0e-08
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: plastocyanin-like domain-containing protein 3.72481e-34
N-terminus
uagpf_v2_unigene41131 uagpf v2.0 302
AutoFact: RPA 70kDa subunit [Pisum sativum] 0.0
Blast2go: replication factor a1 0.0
unknown
uagpf_v2_unigene41339 uagpf v2.0 468
AutoFact: ATP-dependent RNA helicase, putative n=1 Tax=Ricinus communis RepID=B9R8Y0_RICCO 0.0
Blast2go: probable pre-mrna-splicing factor atp-dependent rna helicase-like 0.0
unknown
uagpf_v2_unigene42308 uagpf v2.0 340
AutoFact: kinesin-related protein [Gossypium hirsutum] 0.0
Blast2go: kinesin heavy 0.0
unknown
uagpf_v2_unigene42451 uagpf v2.0 257
AutoFact: DNA ligase (Fragment) n=1 Tax=Vitis vinifera RepID=D7TSX4_VITVI 7.0e-28
FL-Next: sp=DNA ligase; Oryza sativa subsp. indica (Rice). 0.0
Blast2go: dna ligase 1.80942e-34
C-terminus
uagpf_v2_unigene43379 uagpf v2.0 290
AutoFact: RNAse E/G-like protein n=8 Tax=Arabidopsis RepID=F4IV66_ARATH 2.0e-39
FL-Next: tr=At2g04270; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: rnase e g-like protein 5.60519e-45
Internal

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain