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Assembly Name: uagpf v2.0

Name: Pectin lyase fold

Term: IPR012334  Help

Source: InterPro from Sma3


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
uagpf_v2_unigene14645 uagpf v2.0 573
AutoFact: Polygalacturonase n=2 Tax=Arabidopsis thaliana RepID=F4I672_ARATH 1.0e-12
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: pectin lyase-like protein 2.03339e-22
Putative N-terminus
uagpf_v2_unigene14825 uagpf v2.0 866
AutoFact: Polygalacturonase, putative n=1 Tax=Ricinus communis RepID=B9TA63_RICCO 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: probable polygalacturonase-like 0.0
C-terminus
uagpf_v2_unigene15288 uagpf v2.0 813
AutoFact: Polygalacturonase, putative n=1 Tax=Ricinus communis RepID=B9RCG6_RICCO 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: probable polygalacturonase-like 0.0
N-terminus
uagpf_v2_unigene16281 uagpf v2.0 1436
AutoFact: Polygalacturonase, putative n=1 Tax=Ricinus communis RepID=B9RCG6_RICCO 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: probable polygalacturonase-like 0.0
C-terminus
uagpf_v2_unigene16444 uagpf v2.0 620
AutoFact: Probable pectate lyase 9 n=2 Tax=Arabidopsis RepID=PLY9_ARATH 8.0e-24
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: pectate lyase 7.80092e-25
C-terminus
uagpf_v2_unigene18276 uagpf v2.0 1446
AutoFact: Pectinesterase n=2 Tax=Malpighiales RepID=B9H3W4_POPTR 0.0
FL-Next: sp=Pectinesterase 31; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: pectinesterase 0.0
Complete
uagpf_v2_unigene18862 uagpf v2.0 1046
AutoFact: Pectinesterase n=3 Tax=Oryza sativa RepID=B9EVS6_ORYSJ 0.0
FL-Next: sp=Pectinesterase; Taiwania cryptomerioides. 0.0
Blast2go: pectinesterase ppe8b precursor 0.0
C-terminus
uagpf_v2_unigene19834 uagpf v2.0 632
AutoFact: Pectate lyase n=2 Tax=Carica papaya RepID=Q0Q2I1_CARPA 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: pectate lyase 0.0
Putative C-terminus
uagpf_v2_unigene19973 uagpf v2.0 517
AutoFact: Probable pectate lyase 9 n=2 Tax=Arabidopsis RepID=PLY9_ARATH 7.0e-26
Blast2go: pectate lyase 2.48932e-33
unknown
uagpf_v2_unigene20006 uagpf v2.0 386
AutoFact: pectate lyase [Fragaria x ananassa] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: pectate lyase 0.0
Internal
uagpf_v2_unigene20264 uagpf v2.0 356
AutoFact: Pectinesterase n=1 Tax=Picea sitchensis RepID=D5AB84_PICSI 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: probable pectinesterase pectinesterase inhibitor 51-like 0.0
Internal
uagpf_v2_unigene20395 uagpf v2.0 984
AutoFact: Reverse transcriptase n=1 Tax=Picea glauca RepID=Q9M5J7_PICGL 0.0
FL-Next: tr=Reverse transcriptase; Picea glauca (White spruce) (Pinus glauca). 0.0
Blast2go: gag-pol polyprotein 0.0
C-terminus
uagpf_v2_unigene20535 uagpf v2.0 689
AutoFact: pectate lyase-like protein [Arabidopsis thaliana] 8.0e-29
Blast2go: probable pectate lyase 4-like 1.23277e-37
unknown
uagpf_v2_unigene20543 uagpf v2.0 628
AutoFact: pectate lyase-like protein [Arabidopsis thaliana] 8.0e-29
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: probable pectate lyase 4-like 1.23277e-37
Putative C-terminus
uagpf_v2_unigene24979 uagpf v2.0 381
AutoFact: Polygalacturonase, putative n=1 Tax=Ricinus communis RepID=B9RVQ4_RICCO 6.0e-23
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: polygalacturonase 5.21803e-27
Internal
uagpf_v2_unigene25212 uagpf v2.0 469
AutoFact: glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] emb|CAA23048.1| putative polygalacturonase [Arabidopsis thaliana] emb|CAB81300.1| putative polygalacturonase [Arabidopsis thaliana] gb|AAL32775.1| 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: glycoside hydrolase family 28 protein 0.0
C-terminus
uagpf_v2_unigene25433 uagpf v2.0 538
AutoFact: Pectate lyase n=1 Tax=Zinnia violacea RepID=PLY_ZINEL 1.0e-26
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: pectate lyase 3.81327e-32
N-terminus
uagpf_v2_unigene25731 uagpf v2.0 558
AutoFact: ribosome-associated GTPase [Cyanothece sp. CCY0110] gb|EAZ93119.1| ribosome-associated GTPase [Cyanothece sp. CCY0110] 9.0e-35
FL-Next: tr=Putative uncharacterized protein; Zea mays (Maize). 0.0
Blast2go: gtp binding 0.0
C-terminus
uagpf_v2_unigene25793 uagpf v2.0 319
AutoFact: Predicted protein n=11 Tax=Physcomitrella patens RepID=A9S6L2_PHYPA 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: protein 0.0
Internal
uagpf_v2_unigene26273 uagpf v2.0 530
AutoFact: Pectinesterase n=1 Tax=Picea sitchensis RepID=A9NVV0_PICSI 0.0
FL-Next: sp=Pectinesterase; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: pectin methylesterase 0.0
Putative N-terminus

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain