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Assembly Name: uagpf v2.0

Term: IPR019782  Help

Source: InterPro from Sma3


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
uagpf_v2_unigene13128 uagpf v2.0 455
AutoFact: transducin/WD40 domain-containing protein [Arabidopsis thaliana] gb|AAK50098.1|AF372960_1 AT3g15470/MJK13_13 [Arabidopsis thaliana] gb|AAF35413.1| unknown protein [Arabidopsis thaliana] dbj|BAB02376.1| WD-40 repeat protein-like [Arabidopsis thaliana] gb|A 2.0e-21
FL-Next: tr=Predicted protein; subsp. trichocarpa). 0.0
Blast2go: transducin wd40 domain-containing protein 5.96827e-27
Internal
uagpf_v2_unigene13143 uagpf v2.0 725
AutoFact: WD-40 repeat-containing protein MSI1 n=8 Tax=core eudicotyledons RepID=MSI1_ARATH 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: multicopy suppressor of ira1 0.0
C-terminus
uagpf_v2_unigene13181 uagpf v2.0 581
AutoFact: [R] COG2319 FOG: WD40 repeat 1.0e-11
Blast2go: protein 2.92502e-31
unknown
uagpf_v2_unigene13230 uagpf v2.0 900
AutoFact: Unassigned protein
FL-Next: tr=Putative uncharacterized protein; Zea mays (Maize). 0.0
Blast2go: uncharacterized protein 0.0
C-terminus
uagpf_v2_unigene13308 uagpf v2.0 596
AutoFact: U3-55K-like protein 2 [Arabidopsis thaliana] gb|AAY21208.1| U3-55K-like protein 2 [Arabidopsis thaliana] gb|AEE84406.1| U3-55K-like protein 2 [Arabidopsis thaliana] 1.0e-39
Blast2go: protein 0.0
unknown
uagpf_v2_unigene13455 uagpf v2.0 544
AutoFact: coatomer complex subunit [Brachypodium sylvaticum] 0.0
FL-Next: sp=Coatomer subunit beta'-1; Oryza sativa subsp. japonica (Rice). 0.0
Blast2go: coatomer subunit beta -3 0.0
Internal
uagpf_v2_unigene13500 uagpf v2.0 783
AutoFact: RNA recognition motif-containing protein [Arabidopsis thaliana] gb|AAL67015.1| putative DNA binding protein ACBF [Arabidopsis thaliana] gb|AAM45052.1| putative DNA binding protein ACBF [Arabidopsis thaliana] gb|AED92689.1| RNA recognition motif-containing 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: uncharacterized rna-binding isoform 1 0.0
Putative N-terminus
uagpf_v2_unigene13600 uagpf v2.0 237
AutoFact: pfam00400, WD40, WD domain, G-beta repeat 1.0e-07
FL-Next: sp=Transcriptional corepressor LEUNIG; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: transcriptional corepressor leunig 0.0
Internal
uagpf_v2_unigene13623 uagpf v2.0 277
AutoFact: Nucleosome/chromatin assembly factor group n=7 Tax=core eudicotyledons RepID=A9PHH9_POPTR 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: multicopy suppressor of ira1 0.0
Internal
uagpf_v2_unigene13805 uagpf v2.0 1692
AutoFact: [R] COG2319 FOG: WD40 repeat 0.0
FL-Next: sp=Flowering time control protein FY; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: flowering time control protein fy 0.0
Putative C-terminus
uagpf_v2_unigene13896 uagpf v2.0 1526
AutoFact: coatomer subunit alpha-1 [Arabidopsis thaliana] sp|Q94A40.2|COPA1_ARATH RecName: Full=Coatomer subunit alpha-1; AltName: Full=Alpha-coat protein 1; Short=Alpha-COP 1 gb|AAC28519.1| Strong similarity to coatamer alpha subunit (HEPCOP) homolog gb|U24105 fro 0.0
FL-Next: sp=Coatomer subunit alpha-3; Oryza sativa subsp. japonica (Rice). 0.0
C-terminus
uagpf_v2_unigene13918 uagpf v2.0 883
AutoFact: WD-repeat protein, putative n=1 Tax=Ricinus communis RepID=B9SRX4_RICCO 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: protein 0.0
Internal
uagpf_v2_unigene14187 uagpf v2.0 441
AutoFact: transducin/WD40 domain-containing protein [Arabidopsis thaliana] dbj|BAB02018.1| WD40-repeat protein [Arabidopsis thaliana] gb|AAL32514.1| WD40-repeat protein [Arabidopsis thaliana] gb|AAM47943.1| WD40-repeat protein [Arabidopsis thaliana] gb|AEE76041.1| 0.0
FL-Next: tr=Transducin family protein; Arabidopsis lyrata subsp. lyrata (Lyre-leaved rock-cress). 0.0
Blast2go: 66 kda stress protein 0.0
C-terminus
uagpf_v2_unigene14206 uagpf v2.0 1571
AutoFact: Eukaryotic translation initiation factor 3 subunit, putative n=1 Tax=Ricinus communis RepID=B9S7C0_RICCO 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: protein 0.0
Complete
uagpf_v2_unigene14208 uagpf v2.0 907
AutoFact: transducin-like protein [Arabidopsis thaliana] gb|AAK43883.1|AF370506_1 putative WD-40 repeat protein [Arabidopsis thaliana] gb|AAD10153.1| putative WD-40 repeat protein [Arabidopsis thaliana] gb|AAM91214.1| putative WD-40 repeat protein [Arabidopsis thal 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: glutamate-rich wd repeat-containing protein 1 0.0
C-terminus
uagpf_v2_unigene14501 uagpf v2.0 568
AutoFact: WD repeat and SOF domain-containing protein 1 [Arabidopsis thaliana] gb|AAK50083.1|AF372943_1 AT4g28450/F20O9_130 [Arabidopsis thaliana] gb|AAK73982.1| AT4g28450/F20O9_130 [Arabidopsis thaliana] gb|AAN28840.1| At4g28450/F20O9_130 [Arabidopsis thaliana] gb 0.0
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Blast2go: ddb1- and cul4-associated factor 0.0
C-terminus
uagpf_v2_unigene14628 uagpf v2.0 562
AutoFact: RNA export 1 [Nicotiana benthamiana] 0.0
Blast2go: rae1-like protein 0.0
unknown
uagpf_v2_unigene14802 uagpf v2.0 613
AutoFact: WS0348.C21_I08 WS-SE-N-A-19 Picea glauca cDNA clone WS0348_I08 3, mRNA sequence. 0.0
FL-Next: tr=Putative uncharacterized protein Sb04g029510; Sorghum bicolor (Sorghum) (Sorghum vulgare). 0.0
Blast2go: enhancer of mrna-decapping protein 4-like 0.0
Internal
uagpf_v2_unigene14830 uagpf v2.0 433
AutoFact: coatomer alpha subunit-like protein [Lotus japonicus] 9.99995e-41
FL-Next: sp=Coatomer subunit alpha-1; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: protein 0.0
N-terminus
uagpf_v2_unigene14887 uagpf v2.0 684
AutoFact: Katanin p80 WD40 repeat-containing subunit B1-1 [Arabidopsis thaliana] sp|Q8H0T9.3|KTNB1_ARATH RecName: Full=Katanin p80 WD40 repeat-containing subunit B1 homolog 1 gb|AAN72064.1| putative protein [Arabidopsis thaliana] gb|AED93166.1| Katanin p80 WD40 rep 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: katanin p80 wd40 repeat-containing subunit b1 homolog 1-like 0.0
C-terminus

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain