Sustainpine_db
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Assembly Name: uagpf v2.0

Name: Zinc finger, RING-type, conserved site

Term: IPR017907  Help

Source: InterPro from Sma3


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
uagpf_v2_unigene2 uagpf v2.0 434
AutoFact: Chromatin remodeling complex subunit n=1 Tax=Populus trichocarpa RepID=B9GWX1_POPTR 0.0
FL-Next: sp=F-box protein At3g54460; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: f-box protein at3g54460-like 0.0
Internal
uagpf_v2_unigene4 uagpf v2.0 473
AutoFact: DNA repair helicase rad5,16, putative n=1 Tax=Ricinus communis RepID=B9SN70_RICCO 1.99993e-41
FL-Next: sp=Putative SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 3-like 2; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: dna repair helicase 0.0
Internal
uagpf_v2_unigene9 uagpf v2.0 336
AutoFact: PREDICTED: similar to SNF2 domain-containing protein / helicase domain-containing protein / RING finger domain-containing protein n=1 Tax=Vitis vinifera RepID=UPI0001983C0B 0.0
FL-Next: sp=Putative SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 3-like 1; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: helicase-like transcription factor-like protein 0.0
Putative N-terminus
uagpf_v2_unigene12 uagpf v2.0 1272
AutoFact: Glycosyltransferase, CAZy family GT2 n=5 Tax=rosids RepID=B9N113_POPTR 0.0
FL-Next: tr=Cellulose synthase; Pinus radiata (Monterey pine) (Pinus insignis). 0.0
Blast2go: cellulose synthase-like protein 0.0
C-terminus
uagpf_v2_unigene203 uagpf v2.0 628
AutoFact: Unassigned protein
Blast2go: ring finger protein 0.0
unknown
uagpf_v2_unigene261 uagpf v2.0 1622
AutoFact: arabinose kinase [Arabidopsis thaliana] sp|O23461.1|ARAK_ARATH RecName: Full=L-arabinokinase; Short=AtISA1 emb|CAB10392.1| galactokinase like protein [Arabidopsis thaliana] emb|CAB78655.1| galactokinase like protein [Arabidopsis thaliana] gb|AEE83696.1| a 0.0
FL-Next: sp=L-arabinokinase; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: galactokinase like protein 0.0
C-terminus
uagpf_v2_unigene499 uagpf v2.0 1127
AutoFact: pfam03145, Sina, Seven in absentia protein family 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: ubiquitin ligase 0.0
N-terminus
uagpf_v2_unigene981 uagpf v2.0 344
AutoFact: RING-H2 finger protein ATL52 [Arabidopsis thaliana] sp|Q9LF64.1|ATL52_ARATH RecName: Full=RING-H2 finger protein ATL52 emb|CAC01904.1| RING-H2 zinc finger protein-like [Arabidopsis thaliana] gb|AED92447.1| RING-H2 finger protein ATL52 [Arabidopsis thalian 1.0e-33
Blast2go: ring finger 0.0
unknown
uagpf_v2_unigene1092 uagpf v2.0 1249
AutoFact: ankyrin repeat-rich protein [Solanum tuberosum] 0.0
FL-Next: sp=Probable E3 ubiquitin-protein ligase XBOS35; Oryza sativa subsp. japonica (Rice). 0.0
Blast2go: ankyrin repeat-rich protein 0.0
Putative C-terminus
uagpf_v2_unigene1390 uagpf v2.0 575
AutoFact: Protein ariadne-1, putative n=1 Tax=Ricinus communis RepID=B9RZD6_RICCO 0.0
FL-Next: sp=Probable E3 ubiquitin-protein ligase ARI2; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: protein ariadne- 0.0
Putative N-terminus
uagpf_v2_unigene1397 uagpf v2.0 895
AutoFact: Zinc finger, C3HC4 type family protein n=3 Tax=Andropogoneae RepID=B6SSJ0_MAIZE 1.0e-15
Blast2go: protein 7.79632e-16
Putative coding
uagpf_v2_unigene1441 uagpf v2.0 1083
AutoFact: YDG_SRA multi-domain protein 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: zinc finger 0.0
C-terminus
uagpf_v2_unigene1499 uagpf v2.0 426
AutoFact: E3 ubiquitin-protein ligase BRE1-like 1 [Arabidopsis thaliana] sp|Q8RXD6.1|BRE1A_ARATH RecName: Full=E3 ubiquitin-protein ligase BRE1-like 1; Short=AtBRE1; AltName: Full=Protein HISTONE MONOUBIQUITINATION 1; Short=AtHUB1 gb|AAL91211.1| unknown protein [Ar 0.0
unknown
uagpf_v2_unigene1516 uagpf v2.0 1951
AutoFact: Kinase, putative n=2 Tax=rosids RepID=B9SRU2_RICCO 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: feronia receptor-like kinase 0.0
Complete
uagpf_v2_unigene1603 uagpf v2.0 660
AutoFact: Os08g0451800 protein n=1 Tax=Oryza sativa Japonica Group RepID=Q0J5A1_ORYSJ 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: probable e3 ubiquitin-protein ligase rnf144a-like 0.0
C-terminus
uagpf_v2_unigene1717 uagpf v2.0 555
AutoFact: Predicted protein n=1 Tax=Physcomitrella patens subsp. patens RepID=A9S1E3_PHYPA 7.0e-38
FL-Next: sp=RING-H2 finger protein ATL67; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: ring-h2 finger protein atl2m 0.0
C-terminus
uagpf_v2_unigene1727 uagpf v2.0 580
AutoFact: E3 ubiquitin-protein ligase BRE1-like 1 [Arabidopsis thaliana] sp|Q8RXD6.1|BRE1A_ARATH RecName: Full=E3 ubiquitin-protein ligase BRE1-like 1; Short=AtBRE1; AltName: Full=Protein HISTONE MONOUBIQUITINATION 1; Short=AtHUB1 gb|AAL91211.1| unknown protein [Ar 0.0
FL-Next: sp=E3 ubiquitin-protein ligase BRE1-like 1; Arabidopsis thaliana (Mouse-ear cress). 0.0
N-terminus
uagpf_v2_unigene1946 uagpf v2.0 968
AutoFact: E3 ubiquitin-protein ligase [Arabidopsis thaliana] sp|Q93Z92.1|RING4_ARATH RecName: Full=E3 ubiquitin-protein ligase At4g11680; AltName: Full=RING finger protein At4g11680 gb|AAL15343.1| AT4g11680/T5C23_110 [Arabidopsis thaliana] gb|AAR23720.1| At4g11680/ 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
C-terminus
uagpf_v2_unigene1995 uagpf v2.0 567
AutoFact: E3 ubiquitin-protein ligase BRE1-like 1 [Arabidopsis thaliana] sp|Q8RXD6.1|BRE1A_ARATH RecName: Full=E3 ubiquitin-protein ligase BRE1-like 1; Short=AtBRE1; AltName: Full=Protein HISTONE MONOUBIQUITINATION 1; Short=AtHUB1 gb|AAL91211.1| unknown protein [Ar 0.0
FL-Next: sp=E3 ubiquitin-protein ligase BRE1-like 2; Arabidopsis thaliana (Mouse-ear cress). 0.0
Internal
uagpf_v2_unigene2283 uagpf v2.0 1190
AutoFact: C3HC4-type RING finger protein [Arabidopsis thaliana] dbj|BAE98370.1| hypothetical protein [Arabidopsis thaliana] gb|AEE30249.1| C3HC4-type RING finger protein [Arabidopsis thaliana] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: c3hc4-type ring finger protein 0.0
Complete

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain