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Assembly Name: uagpf v2.0

Name: Zinc finger, RING-type, conserved site

Term: IPR017907  Help

Source: InterPro from Sma3


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
uagpf_v2_unigene25522 uagpf v2.0 511
AutoFact: Cellulose synthase n=1 Tax=Pinus radiata RepID=Q4VWW7_PINRA 0.0
Blast2go: cellulose synthase a catalytic subunit 3 0.0
unknown
uagpf_v2_unigene25680 uagpf v2.0 395
AutoFact: putative LRR receptor-like serine/threonine-protein kinase [Arabidopsis thaliana] sp|C0LGI2.1|Y1677_ARATH RecName: Full=Probable LRR receptor-like serine/threonine-protein kinase At1g67720; Flags: Precursor gb|ACN59267.1| leucine-rich repeat receptor-like 0.0
Blast2go: probable lrr receptor-like serine threonine-protein kinase at1g67720-like 0.0
unknown
uagpf_v2_unigene25720 uagpf v2.0 510
AutoFact: Preprotein translocase secA-like protein n=5 Tax=Arabidopsis thaliana RepID=F4HY36_ARATH 2.0e-38
FL-Next: tr=Putative SecA-type chloroplast protein transport factor; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: protein 1.82169e-44
C-terminus
uagpf_v2_unigene25727 uagpf v2.0 532
AutoFact: Protein binding protein, putative n=1 Tax=Ricinus communis RepID=B9T0P2_RICCO 0.0
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Blast2go: ring finger and transmembrane domain-containing protein 2-like 0.0
Internal
uagpf_v2_unigene25936 uagpf v2.0 524
AutoFact: WS0374.C21_B21 SS-B-N-22 Picea sitchensis cDNA clone WS0374_B21 3', mRNA sequence. 0.0
Blast2go: protein 0.0
unknown
uagpf_v2_unigene26017 uagpf v2.0 365
AutoFact: PREDICTED: similar to SNF2 domain-containing protein / helicase domain-containing protein / RING finger domain-containing protein n=1 Tax=Vitis vinifera RepID=UPI00019843BD 0.0
FL-Next: sp=Putative SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 3-like 2; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: atp-dependent helicase rhp16-like 0.0
Internal
uagpf_v2_unigene26104 uagpf v2.0 529
AutoFact: Unassigned protein
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Blast2go: tnf receptor-associated factor 4 0.0
Putative N-terminus
uagpf_v2_unigene26116 uagpf v2.0 243
AutoFact: IBR domain containing protein 7.0e-07
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: probable e3 ubiquitin-protein ligase rnf144a-like 0.0
Internal
uagpf_v2_unigene26118 uagpf v2.0 637
AutoFact: RING/U-box domain-containing protein [Arabidopsis thaliana] ref|NP_001078409.1| RING/U-box domain-containing protein [Arabidopsis thaliana] emb|CAA19684.1| putative protein [Arabidopsis thaliana] emb|CAB78969.1| putative protein [Arabidopsis thaliana] gb| 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: protein 0.0
Internal
uagpf_v2_unigene26237 uagpf v2.0 378
AutoFact: E3 ubiquitin-protein ligase BRE1-like 1 [Arabidopsis thaliana] sp|Q8RXD6.1|BRE1A_ARATH RecName: Full=E3 ubiquitin-protein ligase BRE1-like 1; Short=AtBRE1; AltName: Full=Protein HISTONE MONOUBIQUITINATION 1; Short=AtHUB1 gb|AAL91211.1| unknown protein [Ar 0.0
unknown
uagpf_v2_unigene26309 uagpf v2.0 335
AutoFact: WS0374.C21_B21 SS-B-N-22 Picea sitchensis cDNA clone WS0374_B21 3', mRNA sequence. 0.0
Blast2go: protein 0.0
Coding
uagpf_v2_unigene26507 uagpf v2.0 483
AutoFact: E3 ubiquitin-protein ligase BRE1-like 1 [Arabidopsis thaliana] sp|Q8RXD6.1|BRE1A_ARATH RecName: Full=E3 ubiquitin-protein ligase BRE1-like 1; Short=AtBRE1; AltName: Full=Protein HISTONE MONOUBIQUITINATION 1; Short=AtHUB1 gb|AAL91211.1| unknown protein [Ar 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
C-terminus
uagpf_v2_unigene26526 uagpf v2.0 245
AutoFact: E3 ubiquitin-protein ligase XBAT33 [Arabidopsis thaliana] sp|Q4FE45.1|XB33_ARATH RecName: Full=E3 ubiquitin-protein ligase XBAT33; AltName: Full=Ankyrin repeat domain and RING finger-containing protein XBAT33; AltName: Full=Protein XB3 homolog 3 gb|AAZ140 0.0
FL-Next: sp=E3 ubiquitin-protein ligase XBAT33; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: e3 ubiquitin-protein ligase xbat33-like 0.0
N-terminus
uagpf_v2_unigene26952 uagpf v2.0 400
AutoFact: Zinc finger, C3HC4 type family protein n=3 Tax=Andropogoneae RepID=B6SSJ0_MAIZE 1.0e-32
Blast2go: zinc c3hc4 type family protein 2.6244e-35
Putative coding
uagpf_v2_unigene27144 uagpf v2.0 455
AutoFact: Zinc finger protein, putative n=1 Tax=Ricinus communis RepID=B9SK22_RICCO 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: protein 0.0
Internal
uagpf_v2_unigene27305 uagpf v2.0 648
AutoFact: Protein ariadne-1, putative n=1 Tax=Ricinus communis RepID=B9RZD6_RICCO 0.0
FL-Next: sp=Probable E3 ubiquitin-protein ligase ARI2; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: protein ariadne- 0.0
C-terminus
uagpf_v2_unigene27320 uagpf v2.0 380
AutoFact: E3 ubiquitin-protein ligase HOS1 [Arabidopsis thaliana] sp|Q84JU6.1|HOS1_ARATH RecName: Full=E3 ubiquitin-protein ligase HOS1; AltName: Full=Protein HIGH EXPRESSION OF OSMOTICALLY RESPONSIVE GENE 1; AltName: Full=RING finger protein HOS1 gb|AAO42259.1| un 2.0e-28
FL-Next: sp=E3 ubiquitin-protein ligase HOS1; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: e3 ubiquitin-protein ligase hos1-like 1.16831e-39
Internal
uagpf_v2_unigene27331 uagpf v2.0 691
AutoFact: cellulose synthase 6 [Eucalyptus grandis] 0.0
FL-Next: tr=Cellulose synthase catalytic subunit; Pinus radiata (Monterey pine) (Pinus insignis). 0.0
Blast2go: cellulose synthase 0.0
N-terminus
uagpf_v2_unigene27499 uagpf v2.0 398
AutoFact: Protein binding protein, putative n=1 Tax=Ricinus communis RepID=B9T0P2_RICCO 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: ring finger and transmembrane domain-containing protein 2-like 0.0
C-terminus
uagpf_v2_unigene27630 uagpf v2.0 664
AutoFact: IBR domain containing protein 7.0e-07
Blast2go: probable e3 ubiquitin-protein ligase rnf144a-like 0.0
unknown

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain