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Assembly Name: uagpf v2.0

Name: Zinc finger, RING-type, conserved site

Term: IPR017907  Help

Source: InterPro from Sma3


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
uagpf_v2_unigene5325 uagpf v2.0 613
AutoFact: Ankyrin-repeat containing protein, putative n=1 Tax=Ricinus communis RepID=B9RG78_RICCO 0.0
FL-Next: sp=E3 ubiquitin-protein ligase KEG; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: at5g13530-like protein 0.0
C-terminus
uagpf_v2_unigene5332 uagpf v2.0 371
AutoFact: putative helicase [Arabidopsis thaliana] 0.0
Blast2go: dna helicase ino80-like 0.0
unknown
uagpf_v2_unigene5633 uagpf v2.0 750
AutoFact: DUF221 domain containing protein 0.0
FL-Next: tr=Predicted protein; subsp. trichocarpa). 0.0
Blast2go: protein 0.0
C-terminus
uagpf_v2_unigene5883 uagpf v2.0 705
AutoFact: RING/U-box domain-containing protein [Arabidopsis thaliana] gb|AAF20234.1|AC012395_21 putative RING zinc finger protein [Arabidopsis thaliana] gb|AAV85664.1| At3g07120 [Arabidopsis thaliana] gb|AAW78594.1| At3g07120 [Arabidopsis thaliana] gb|AEE74501.1| R 1.0e-24
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Blast2go: ring u-box domain-containing protein 2.8495e-36
C-terminus
uagpf_v2_unigene6051 uagpf v2.0 746
AutoFact: DUF716 domain containing protein 0.0
Blast2go: protein 0.0
Coding
uagpf_v2_unigene6079 uagpf v2.0 518
AutoFact: Chromatin remodeling complex subunit (Fragment) n=1 Tax=Populus trichocarpa RepID=B9H8S6_POPTR 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: helicase-like transcription factor 0.0
Internal
uagpf_v2_unigene6098 uagpf v2.0 1111
AutoFact: putative E3 ubiquitin-protein ligase BAH1-like protein [Arabidopsis thaliana] sp|Q8GW10.1|BAH1L_ARATH RecName: Full=Probable E3 ubiquitin-protein ligase BAH1-like; AltName: Full=RING finger protein 178 dbj|BAC43727.1| unknown protein [Arabidopsis thaliana 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: e3 ubiquitin-protein ligase bah1-like protein 0.0
N-terminus
uagpf_v2_unigene6312 uagpf v2.0 728
AutoFact: cellulose synthase 6 [Populus tremuloides] 0.0
Blast2go: cellulose synthase 0.0
unknown
uagpf_v2_unigene6441 uagpf v2.0 857
AutoFact: RING/U-box domain-containing protein [Arabidopsis thaliana] ref|NP_851156.1| RING/U-box domain-containing protein [Arabidopsis thaliana] ref|NP_974908.1| RING/U-box domain-containing protein [Arabidopsis thaliana] gb|AAN13007.1| unknown protein [Arabidops 1.0e-14
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: protein 0.0
Putative Complete
uagpf_v2_unigene6601 uagpf v2.0 1282
AutoFact: RING/U-box domain-containing protein [Arabidopsis thaliana] ref|NP_001078409.1| RING/U-box domain-containing protein [Arabidopsis thaliana] emb|CAA19684.1| putative protein [Arabidopsis thaliana] emb|CAB78969.1| putative protein [Arabidopsis thaliana] gb| 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: protein 0.0
C-terminus
uagpf_v2_unigene6862 uagpf v2.0 781
AutoFact: e-cadherin binding protein-like protein [Arabidopsis thaliana] emb|CAB69844.1| putative protein [Arabidopsis thaliana] gb|ABD59082.1| At5g01160 [Arabidopsis thaliana] dbj|BAE99278.1| hypothetical protein [Arabidopsis thaliana] gb|AED90305.1| e-cadherin bi 2.0e-31
FL-Next: tr=Predicted protein; Thalassiosira pseudonana (Marine diatom) (Cyclotella nana). 0.0
Blast2go: e-cadherin binding protein 3.11804e-35
Internal
uagpf_v2_unigene6891 uagpf v2.0 851
AutoFact: E3 ubiquitin-protein ligase makorin [Arabidopsis thaliana] ref|NP_974255.1| E3 ubiquitin-protein ligase makorin [Arabidopsis thaliana] sp|Q6IDS6.1|C3H35_ARATH RecName: Full=E3 ubiquitin-protein ligase makorin; AltName: Full=Zinc finger CCCH domain-contain 4.0e-23
FL-Next: sp=E3 ubiquitin-protein ligase makorin; Oryza sativa subsp. japonica (Rice). 0.0
Blast2go: e3 ubiquitin-protein ligase makorin 9.26154e-36
C-terminus
uagpf_v2_unigene6893 uagpf v2.0 818
AutoFact: RING finger-like protein [Oryza sativa Japonica Group] dbj|BAB90773.1| RING finger-like protein [Oryza sativa Japonica Group] dbj|BAG89633.1| unnamed protein product [Oryza sativa Japonica Group] 6.0e-39
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: zinc finger family protein 0.0
N-terminus
uagpf_v2_unigene7055 uagpf v2.0 604
AutoFact: Protein binding protein, putative n=1 Tax=Ricinus communis RepID=B9T0P2_RICCO 0.0
Blast2go: ring finger and transmembrane domain-containing protein 2-like 0.0
unknown
uagpf_v2_unigene7148 uagpf v2.0 943
AutoFact: Zinc finger, C3HC4 type family protein n=3 Tax=Andropogoneae RepID=B6SSJ0_MAIZE 1.0e-15
Blast2go: protein 7.79632e-16
Coding
uagpf_v2_unigene7199 uagpf v2.0 1348
AutoFact: RING/U-box domain-containing protein [Arabidopsis thaliana] ref|NP_974453.1| RING/U-box domain-containing protein [Arabidopsis thaliana] ref|NP_974454.1| RING/U-box domain-containing protein [Arabidopsis thaliana] ref|NP_001190122.1| RING/U-box domain-con 2.0e-29
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: zinc c3hc4 type family protein 0.0
Putative Complete
uagpf_v2_unigene7448 uagpf v2.0 609
AutoFact: E3 ubiquitin-protein ligase BRE1-like 1 [Arabidopsis thaliana] sp|Q8RXD6.1|BRE1A_ARATH RecName: Full=E3 ubiquitin-protein ligase BRE1-like 1; Short=AtBRE1; AltName: Full=Protein HISTONE MONOUBIQUITINATION 1; Short=AtHUB1 gb|AAL91211.1| unknown protein [Ar 0.0
FL-Next: sp=E3 ubiquitin-protein ligase BRE1-like 1; Arabidopsis thaliana (Mouse-ear cress). 0.0
Internal
uagpf_v2_unigene7571 uagpf v2.0 644
AutoFact: Receptor-like kinase n=1 Tax=Marchantia polymorpha RepID=A7VM23_MARPO 0.0
Blast2go: protein 0.0
unknown
uagpf_v2_unigene7585 uagpf v2.0 1620
AutoFact: RING/U-box domain-containing protein [Arabidopsis thaliana] ref|NP_001078409.1| RING/U-box domain-containing protein [Arabidopsis thaliana] emb|CAA19684.1| putative protein [Arabidopsis thaliana] emb|CAB78969.1| putative protein [Arabidopsis thaliana] gb| 7.00649e-44
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: protein 0.0
Complete
uagpf_v2_unigene7593 uagpf v2.0 396
AutoFact: IBR domain containing protein 7.0e-07
Blast2go: probable e3 ubiquitin-protein ligase rnf144a-like 0.0
Putative coding

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain