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Assembly Name: uagpf v2.0

Name: Zinc finger, RING-type, conserved site

Term: IPR017907  Help

Source: InterPro from Sma3


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
uagpf_v2_unigene2646 uagpf v2.0 462
AutoFact: Beta-glucosidase n=1 Tax=Pinus contorta RepID=Q9ZT64_PINCO 8.0e-20
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: protein 1.73857e-23
Internal
uagpf_v2_unigene2804 uagpf v2.0 464
AutoFact: Whole genome shotgun sequence of line PN40024, scaffold_3.assembly12x (Fragment) n=1 Tax=Vitis vinifera RepID=D7TKE6_VITVI 3.0e-25
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: protein breast cancer susceptibility 1 homolog 1.18593e-28
Putative N-terminus
uagpf_v2_unigene3153 uagpf v2.0 649
AutoFact: putative E3 ubiquitin-protein ligase ARI8 [Arabidopsis thaliana] sp|Q8W468.1|ARI8_ARATH RecName: Full=Probable E3 ubiquitin-protein ligase ARI8; AltName: Full=ARIADNE-like protein ARI8; AltName: Full=Protein ariadne homolog 8 gb|AAL32886.1| Unknown protei 0.0
FL-Next: sp=Probable E3 ubiquitin-protein ligase ARI8; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: probable e3 ubiquitin-protein ligase ari7-like 0.0
Internal
uagpf_v2_unigene3247 uagpf v2.0 608
AutoFact: zinc finger-related and helicase and IBR domain-containing protein [Arabidopsis thaliana] sp|P0CE10.1|Y4102_ARATH RecName: Full=Putative uncharacterized protein At4g01020, chloroplastic; Flags: Precursor gb|AEE81967.1| zinc finger-related and helicase and 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: uncharacterized protein chloroplastic-like 0.0
Internal
uagpf_v2_unigene3309 uagpf v2.0 762
AutoFact: putative E3 ubiquitin-protein ligase ARI8 [Arabidopsis thaliana] sp|Q8W468.1|ARI8_ARATH RecName: Full=Probable E3 ubiquitin-protein ligase ARI8; AltName: Full=ARIADNE-like protein ARI8; AltName: Full=Protein ariadne homolog 8 gb|AAL32886.1| Unknown protei 0.0
FL-Next: sp=Probable E3 ubiquitin-protein ligase ARI8; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: protein 0.0
C-terminus
uagpf_v2_unigene3623 uagpf v2.0 518
AutoFact: [R] COG2319 FOG: WD40 repeat 2.0e-10
Blast2go: protein 0.0
unknown
uagpf_v2_unigene3638 uagpf v2.0 444
AutoFact: Chromatin remodeling complex subunit n=1 Tax=Populus trichocarpa RepID=B9GWX1_POPTR 1.0e-10
Blast2go: f-box protein at3g54460-like 8.54859e-13
unknown
uagpf_v2_unigene3967 uagpf v2.0 1668
AutoFact: RING-H2 finger protein ATL1M, putative n=1 Tax=Ricinus communis RepID=B9T6E5_RICCO 2.0e-34
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: ring-h2 finger protein atl3c 0.0
Complete
uagpf_v2_unigene4022 uagpf v2.0 851
AutoFact: YDG_SRA multi-domain protein 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: zinc finger 0.0
Internal
uagpf_v2_unigene4039 uagpf v2.0 605
AutoFact: E3 ubiquitin-protein ligase PRT1 [Arabidopsis thaliana] sp|Q8LBL5.2|PRT1_ARATH RecName: Full=E3 ubiquitin-protein ligase PRT1; AltName: Full=Proteolysis 1 protein emb|CAA11891.1| PRT1 [Arabidopsis thaliana] emb|CAA11892.1| PRT1 [Arabidopsis thaliana] dbj| 0.0
Blast2go: e3 ubiquitin-protein ligase prt1 0.0
unknown
uagpf_v2_unigene4095 uagpf v2.0 823
AutoFact: RING/U-box domain-containing protein [Arabidopsis thaliana] gb|AAF79455.1|AC025808_37 F18O14.3 [Arabidopsis thaliana] gb|AAL15335.1| At1g19310/F18O14_14 [Arabidopsis thaliana] gb|AAM51593.1| At1g19310/F18O14_14 [Arabidopsis thaliana] gb|AAM62463.1| unknow 3.0e-15
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: protein 7.41713e-19
N-terminus
uagpf_v2_unigene4182 uagpf v2.0 563
AutoFact: putative E3 ubiquitin-protein ligase BAH1-like protein [Arabidopsis thaliana] sp|Q8GW10.1|BAH1L_ARATH RecName: Full=Probable E3 ubiquitin-protein ligase BAH1-like; AltName: Full=RING finger protein 178 dbj|BAC43727.1| unknown protein [Arabidopsis thaliana 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: protein 0.0
C-terminus
uagpf_v2_unigene4542 uagpf v2.0 433
AutoFact: RING-H2 finger protein ATL58 [Arabidopsis thaliana] sp|Q570X5.1|ATL58_ARATH RecName: Full=RING-H2 finger protein ATL58 dbj|BAD94869.1| hypothetical protein [Arabidopsis thaliana] gb|AEE31599.1| RING-H2 finger protein ATL58 [Arabidopsis thaliana] 7.0e-34
Blast2go: ring-h2 finger protein atl7-like 0.0
unknown
uagpf_v2_unigene4782 uagpf v2.0 735
AutoFact: Ring finger protein, putative n=1 Tax=Ricinus communis RepID=B9T6X0_RICCO 0.0
Blast2go: ring-h2 finger protein atl13 0.0
Coding
uagpf_v2_unigene4962 uagpf v2.0 597
AutoFact: DUF716 domain containing protein 4.0e-35
FL-Next: tr=Putative uncharacterized protein; Selaginella moellendorffii (Spikemoss). 0.0
Blast2go: protein 5.09329e-40
Putative C-terminus
uagpf_v2_unigene5155 uagpf v2.0 835
AutoFact: putative BRCT domain-containing protein [Oryza sativa Japonica Group] 0.0
FL-Next: sp=Protein BREAST CANCER SUSCEPTIBILITY 1 homolog; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: protein breast cancer susceptibility 1 homolog 0.0
Putative C-terminus
uagpf_v2_unigene5216 uagpf v2.0 923
AutoFact: Protein binding protein, putative n=1 Tax=Ricinus communis RepID=B9T0P2_RICCO 0.0
FL-Next: tr=Putative uncharacterized protein OJ1333_C12.12; Oryza sativa subsp. japonica (Rice). 0.0
Blast2go: ring finger and transmembrane domain-containing protein 2-like 0.0
C-terminus
uagpf_v2_unigene5292 uagpf v2.0 542
AutoFact: Unassigned protein
Blast2go: unknown [Picea sitchensis] 5.60265e-11
unknown
uagpf_v2_unigene5294 uagpf v2.0 596
AutoFact: putative DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 8 (RNA helicase) [Oryza sativa Japonica Group] 9.99995e-41
FL-Next: sp=Putative uncharacterized protein At4g01020, chloroplastic; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: uncharacterized protein chloroplastic-like 0.0
Internal
uagpf_v2_unigene5320 uagpf v2.0 1125
AutoFact: RING/U-box domain-containing protein [Arabidopsis thaliana] gb|AAF20234.1|AC012395_21 putative RING zinc finger protein [Arabidopsis thaliana] gb|AAV85664.1| At3g07120 [Arabidopsis thaliana] gb|AAW78594.1| At3g07120 [Arabidopsis thaliana] gb|AEE74501.1| R 1.0e-24
Blast2go: ring u-box domain-containing protein 2.8495e-36
Putative coding

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain