Sustainpine_db
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Assembly Name: uagpf v2.0

Name: WD40/YVTN repeat-like-containing domain

Term: IPR015943  Help

Source: InterPro from Sma3


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
uagpf_v2_unigene27225 uagpf v2.0 421
AutoFact: Katanin p80 WD40 repeat-containing subunit B1-1 [Arabidopsis thaliana] sp|Q8H0T9.3|KTNB1_ARATH RecName: Full=Katanin p80 WD40 repeat-containing subunit B1 homolog 1 gb|AAN72064.1| putative protein [Arabidopsis thaliana] gb|AED93166.1| Katanin p80 WD40 rep 0.0
FL-Next: tr=Predicted protein; subsp. trichocarpa). 0.0
Blast2go: katanin p80 wd40 repeat-containing subunit b1 homolog 1-like 0.0
Internal
uagpf_v2_unigene27269 uagpf v2.0 389
AutoFact: transducin/WD40 domain-containing protein [Arabidopsis thaliana] gb|AAF76355.1| hypothetical protein [Arabidopsis thaliana] gb|AAO42310.1| unknown protein [Arabidopsis thaliana] gb|AAP04120.1| unknown protein [Arabidopsis thaliana] gb|AEE74922.1| transduc 0.0
Blast2go: probable u3 small nucleolar rna-associated protein 7-like 0.0
unknown
uagpf_v2_unigene27331 uagpf v2.0 691
AutoFact: cellulose synthase 6 [Eucalyptus grandis] 0.0
FL-Next: tr=Cellulose synthase catalytic subunit; Pinus radiata (Monterey pine) (Pinus insignis). 0.0
Blast2go: cellulose synthase 0.0
N-terminus
uagpf_v2_unigene27487 uagpf v2.0 313
AutoFact: WD-repeat protein, putative 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: protein 0.0
C-terminus
uagpf_v2_unigene27492 uagpf v2.0 354
AutoFact: Lissencephaly type-1-like homology motif; CTLH, C-terminal to LisH motif; Nitrous oxide reductase, N-terminal; WD40-like; Quinonprotein alcohol dehydrogenase-like n=1 Tax=Medicago truncatula RepID=Q2HW32_MEDTR 0.0
Blast2go: topless-related protein 3 0.0
unknown
uagpf_v2_unigene27499 uagpf v2.0 398
AutoFact: Protein binding protein, putative n=1 Tax=Ricinus communis RepID=B9T0P2_RICCO 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: ring finger and transmembrane domain-containing protein 2-like 0.0
C-terminus
uagpf_v2_unigene27637 uagpf v2.0 436
AutoFact: Serine/threonine-protein phosphatase (Fragment) n=2 Tax=Vitis vinifera RepID=D7TP64_VITVI 0.0
FL-Next: sp=Serine/threonine-protein phosphatase BSL1 homolog; Oryza sativa subsp. japonica (Rice). 0.0
Blast2go: serine threonine protein phosphatase 0.0
Internal
uagpf_v2_unigene27654 uagpf v2.0 234
AutoFact: WD-repeat protein, putative n=1 Tax=Ricinus communis RepID=B9SAP3_RICCO 0.0
Blast2go: protein 0.0
unknown
uagpf_v2_unigene27709 uagpf v2.0 382
AutoFact: Putative auxin-independent growth promoter n=2 Tax=Poaceae RepID=Q67X84_ORYSJ 1.0e-38
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: protein 1.23314e-43
C-terminus
uagpf_v2_unigene27714 uagpf v2.0 277
AutoFact: cellulose synthase 6 [Eucalyptus grandis] 0.0
FL-Next: tr=Cellulose synthase; Pinus radiata (Monterey pine) (Pinus insignis). 0.0
Blast2go: cellulose synthase 0.0
Internal
uagpf_v2_unigene27720 uagpf v2.0 265
AutoFact: coatomer subunit beta'-2 [Arabidopsis thaliana] sp|Q9C827.1|COB22_ARATH RecName: Full=Coatomer subunit beta'-2; AltName: Full=Beta'-coat protein 2; Short=Beta'-COP 2 gb|AAG51545.1|AC037424_10 coatomer complex subunit, putative; 33791-27676 [Arabidopsis th 0.0
unknown
uagpf_v2_unigene27750 uagpf v2.0 723
AutoFact: coatomer complex subunit [Brachypodium sylvaticum] 0.0
FL-Next: sp=Coatomer subunit beta'-2; Oryza sativa subsp. japonica (Rice). 0.0
Blast2go: coatomer subunit beta -3 0.0
N-terminus
uagpf_v2_unigene27771 uagpf v2.0 472
AutoFact: CV03066X1C11.f1 CV03-normalized library Euphorbia esula cDNA clone CV03066X1C11.f1 5, mRNA sequence. 0.0
FL-Next: tr=Predicted protein; subsp. trichocarpa). 0.0
Blast2go: probable inactive serine threonine-protein kinase lvsg-like 0.0
Internal
uagpf_v2_unigene27853 uagpf v2.0 390
AutoFact: coatomer complex subunit [Brachypodium sylvaticum] 0.0
FL-Next: sp=Coatomer subunit beta'-1; Oryza sativa subsp. japonica (Rice). 0.0
Blast2go: coatomer subunit beta -3 0.0
Internal
uagpf_v2_unigene27932 uagpf v2.0 497
AutoFact: GTP binding protein, putative n=1 Tax=Ricinus communis RepID=B9SRI2_RICCO 0.0
FL-Next: Isoform 2 of Dynamin-like protein ARC5 OS=Arabidopsis thaliana GN=ARC5 0.0
Blast2go: gtp binding 0.0
C-terminus
uagpf_v2_unigene27972 uagpf v2.0 412
AutoFact: WD repeat and SOF domain-containing protein 1 [Arabidopsis thaliana] gb|AAK50083.1|AF372943_1 AT4g28450/F20O9_130 [Arabidopsis thaliana] gb|AAK73982.1| AT4g28450/F20O9_130 [Arabidopsis thaliana] gb|AAN28840.1| At4g28450/F20O9_130 [Arabidopsis thaliana] gb 0.0
FL-Next: tr=Predicted protein; Physcomitrella patens subsp. patens (Moss). 0.0
Blast2go: ddb1- and cul4-associated factor 0.0
Internal
uagpf_v2_unigene28048 uagpf v2.0 1571
AutoFact: [R] COG2319 FOG: WD40 repeat 0.0
FL-Next: sp=Flowering time control protein FY; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: flowering time control protein fy 0.0
C-terminus
uagpf_v2_unigene28054 uagpf v2.0 562
AutoFact: Unassigned protein
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: protein 8.96148e-31
N-terminus
uagpf_v2_unigene28117 uagpf v2.0 226
AutoFact: [R] COG2319 FOG: WD40 repeat 3.0e-18
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: wd repeat-containing protein 18-like 0.0
Putative N-terminus
uagpf_v2_unigene28119 uagpf v2.0 259
AutoFact: Nucleosome remodeling factor, p48 subunit n=1 Tax=Physcomitrella patens subsp. patens RepID=A9RJC1_PHYPA 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: nucleosome chromatin assembly factor group 0.0
Putative C-terminus

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain