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Assembly Name: uagpf v2.0

Name: Zinc finger, RING-type

Term: IPR001841  Help

Source: InterPro from Sma3


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
uagpf_v2_unigene48334 uagpf v2.0 437
AutoFact: Whole genome shotgun sequence of line PN40024, scaffold_9.assembly12x (Fragment) n=1 Tax=Vitis vinifera RepID=D7T1L9_VITVI 2.0e-36
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: e3 ubiquitin-protein ligase rhf2a 0.0
N-terminus
uagpf_v2_unigene48346 uagpf v2.0 339
AutoFact: Zinc finger protein, putative n=1 Tax=Ricinus communis RepID=B9SZY8_RICCO 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: e3 ubiquitin-protein ligase ring1-like 0.0
C-terminus
uagpf_v2_unigene48362 uagpf v2.0 320
AutoFact: Protein binding protein, putative n=1 Tax=Ricinus communis RepID=B9R6Q1_RICCO 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: protein binding 0.0
Internal
uagpf_v2_unigene48380 uagpf v2.0 387
AutoFact: putative transcriptional regulator [Arabidopsis thaliana] 0.0
FL-Next: Isoform 2 of ATP-dependent helicase BRM OS=Arabidopsis thaliana GN=BRM 0.0
Blast2go: chromatin remodeling complex subunit 0.0
Internal
uagpf_v2_unigene48414 uagpf v2.0 157
AutoFact: Transcription factor, putative n=1 Tax=Ricinus communis RepID=B9RF92_RICCO 2.0e-12
Blast2go: zf-4cxxc-r1 transcription factor and jumonji domain-containing protein 3.96148e-14
unknown
uagpf_v2_unigene48646 uagpf v2.0 302
AutoFact: Unassigned protein
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: protein 0.0
Putative N-terminus
uagpf_v2_unigene48656 uagpf v2.0 421
AutoFact: cellulose synthase 5 [Physcomitrella patens] 2.0e-40
FL-Next: tr=Cellulose synthase catalytic subunit; Pinus taeda (Loblolly pine). 0.0
Blast2go: cellulose synthase 0.0
Internal
uagpf_v2_unigene48778 uagpf v2.0 384
AutoFact: Unassigned protein
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: unknown [Picea sitchensis] 8.47814e-15
N-terminus
uagpf_v2_unigene48789 uagpf v2.0 412
AutoFact: pfam07576, BRAP2, BRCA1-associated protein 2 9.0e-28
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Blast2go: brca1-associated protein 0.0
Internal
uagpf_v2_unigene49049 uagpf v2.0 274
AutoFact: DEA(D/H)-box RNA helicase family protein n=5 Tax=Arabidopsis RepID=F4IM84_ARATH 0.0
FL-Next: sp=Probable pre-mRNA-splicing factor ATP-dependent RNA helicase; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: probable atp-dependent rna helicase dhx36-like 0.0
Internal
uagpf_v2_unigene49067 uagpf v2.0 400
AutoFact: Putative zinc finger protein n=2 Tax=Oryza sativa Japonica Group RepID=Q6L4V6_ORYSJ 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: ribosomal protein l11 methyltransferase 0.0
C-terminus
uagpf_v2_unigene49325 uagpf v2.0 237
AutoFact: CHY and CTCHY and RING-type zinc finger protein [Arabidopsis thaliana] gb|AED93462.1| CHY and CTCHY and RING-type zinc finger protein [Arabidopsis thaliana] 0.0
Blast2go: ring finger and chy zinc finger domain-containing protein 0.0
Putative coding
uagpf_v2_unigene49479 uagpf v2.0 155
AutoFact: Bromodomain-containing protein, putative n=1 Tax=Ricinus communis RepID=B9RAK3_RICCO 0.0
Blast2go: nuclear protein x1 0.0
unknown
uagpf_v2_unigene49666 uagpf v2.0 528
AutoFact: U-box multi-domain protein 3.0e-17
FL-Next: sp=U-box domain-containing protein 16; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: protein 0.0
N-terminus
uagpf_v2_unigene49732 uagpf v2.0 657
AutoFact: Ubiquitin-protein ligase, putative n=1 Tax=Ricinus communis RepID=B9R7Z4_RICCO 1.0e-29
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: protein 0.0
N-terminus
uagpf_v2_unigene49765 uagpf v2.0 471
AutoFact: Spotted leaf protein, putative n=1 Tax=Ricinus communis RepID=B9T786_RICCO 0.0
FL-Next: sp=U-box domain-containing protein 13; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: protein 0.0
N-terminus
uagpf_v2_unigene49833 uagpf v2.0 506
AutoFact: Zinc finger, RING-type [Medicago truncatula] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: e3 ubiquitin-protein ligase rhf2a 0.0
C-terminus
uagpf_v2_unigene49836 uagpf v2.0 446
AutoFact: PREDICTED: SINA2p isoform 2 [Vitis vinifera] ref|XP_002280243.1| PREDICTED: SINA2p isoform 1 [Vitis vinifera] emb|CAB40578.1| SINA2p [Vitis vinifera] emb|CBI29998.3| unnamed protein product [Vitis vinifera] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: e3 ubiquitin-protein ligase sinat2 0.0
C-terminus
uagpf_v2_unigene49838 uagpf v2.0 580
AutoFact: E3 ubiquitin-protein ligase SDIR1 [Arabidopsis thaliana] sp|Q9M2S6.1|SDIR1_ARATH RecName: Full=E3 ubiquitin-protein ligase SDIR1; AltName: Full=Protein salt- and drought-induced RING finger1 gb|AAK62440.1|AF386995_1 putative protein [Arabidopsis thaliana] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: protein binding protein 0.0
N-terminus
uagpf_v2_unigene49874 uagpf v2.0 384
AutoFact: Makorin-1, putative n=1 Tax=Ricinus communis RepID=B9SL96_RICCO 0.0
Blast2go: ccch-type zinc finger protein c3h69 0.0
unknown

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain