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Assembly Name: uagpf v2.0

Name: Zinc finger, RING-type

Term: IPR001841  Help

Source: InterPro from Sma3


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
uagpf_v2_unigene38428 uagpf v2.0 517
AutoFact: Unassigned protein
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: enhanced downy mildew 2 0.0
Putative Complete
uagpf_v2_unigene38449 uagpf v2.0 455
AutoFact: putative PHD zinc finger protein [Ipomoea trifida] dbj|BAF36299.1| hypothetical protein [Ipomoea trifida] 0.0
FL-Next: tr=PHD finger family protein; Arabidopsis lyrata subsp. lyrata (Lyre-leaved rock-cress). 0.0
Blast2go: dna binding 0.0
Internal
uagpf_v2_unigene38488 uagpf v2.0 249
AutoFact: Protein binding protein, putative n=1 Tax=Ricinus communis RepID=B9RB36_RICCO 0.0
Blast2go: e3 ubiquitin-protein ligase sis3-like 0.0
unknown
uagpf_v2_unigene38587 uagpf v2.0 281
AutoFact: RING/U-box domain-containing protein [Arabidopsis thaliana] ref|NP_974832.1| RING/U-box domain-containing protein [Arabidopsis thaliana] gb|AAM97093.1| RING finger-like protein [Arabidopsis thaliana] gb|AAT47817.1| At5g24870 [Arabidopsis thaliana] gb|AED9 1.0e-32
Blast2go: ring u-box domain-containing protein 1.4013e-45
Coding
uagpf_v2_unigene38699 uagpf v2.0 291
AutoFact: RING/U-box domain-containing protein [Arabidopsis thaliana] ref|NP_973461.1| RING/U-box domain-containing protein [Arabidopsis thaliana] gb|AAL11603.1|AF424609_1 unknown protein [Arabidopsis thaliana] gb|AAM15000.1| Expressed protein [Arabidopsis thaliana 3.0e-36
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: protein 0.0
Putative C-terminus
uagpf_v2_unigene38891 uagpf v2.0 422
AutoFact: Protein binding protein, putative n=1 Tax=Ricinus communis RepID=B9R6Q1_RICCO 0.0
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Blast2go: protein binding 0.0
C-terminus
uagpf_v2_unigene38912 uagpf v2.0 345
AutoFact: protein phosphatase 2C (PP2C) [Fagus sylvatica] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: protein phosphatase 0.0
Internal
uagpf_v2_unigene38936 uagpf v2.0 268
AutoFact: E3 ubiquitin-protein ligase BRE1-like 1 [Arabidopsis thaliana] sp|Q8RXD6.1|BRE1A_ARATH RecName: Full=E3 ubiquitin-protein ligase BRE1-like 1; Short=AtBRE1; AltName: Full=Protein HISTONE MONOUBIQUITINATION 1; Short=AtHUB1 gb|AAL91211.1| unknown protein [Ar 0.0
FL-Next: sp=E3 ubiquitin-protein ligase BRE1-like 2; Arabidopsis thaliana (Mouse-ear cress). 0.0
Internal
uagpf_v2_unigene38965 uagpf v2.0 371
AutoFact: Os08g0451800 protein n=1 Tax=Oryza sativa Japonica Group RepID=Q0J5A1_ORYSJ 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: probable e3 ubiquitin-protein ligase rnf144a-like 0.0
N-terminus
uagpf_v2_unigene39054 uagpf v2.0 321
AutoFact: Unassigned protein
FL-Next: tr=Predicted protein; Physcomitrella patens subsp. patens (Moss). 0.0
Blast2go: vacuolar protein sorting-associated protein 18 homolog 0.0
N-terminus
uagpf_v2_unigene39112 uagpf v2.0 419
AutoFact: RING/U-box domain-containing protein [Arabidopsis thaliana] gb|AAW80858.1| At5g45290 [Arabidopsis thaliana] gb|AAW80870.1| At5g45290 [Arabidopsis thaliana] gb|AED95227.1| RING/U-box domain-containing protein [Arabidopsis thaliana] 0.0
Blast2go: ring finger protein 0.0
Putative coding
uagpf_v2_unigene39373 uagpf v2.0 440
AutoFact: pfam00628, PHD, PHD-finger 2.0e-06
FL-Next: sp=Histone acetyltransferase HAC4; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: uncharacterized protein at4g10930-like 0.0
Internal
uagpf_v2_unigene39525 uagpf v2.0 171
AutoFact: ubiquitination-promoting complex protein 1 [Arabidopsis thaliana] sp|Q9SIZ8.2|RKP_ARATH RecName: Full=E3 ubiquitin-protein ligase RKP; Short=AtKPC1; AltName: Full=Protein RELATED TO KPC1 gb|AEC07251.1| ubiquitination-promoting complex protein 1 [Arabidops 3.0e-06
FL-Next: sp=E3 ubiquitin-protein ligase RKP; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: ubiquitination-promoting complex protein 1 8.39441e-12
Internal
uagpf_v2_unigene39724 uagpf v2.0 345
AutoFact: E3 ubiquitin ligase-like protein [Arabidopsis thaliana] gb|AAM91555.1| putative RING zinc finger protein [Arabidopsis thaliana] gb|AAN15327.1| putative RING zinc finger protein [Arabidopsis thaliana] dbj|BAD43976.1| unknown protein [Arabidopsis thaliana] 1.4013e-45
FL-Next: tr=Predicted protein; Physcomitrella patens subsp. patens (Moss). 0.0
Blast2go: e3 ubiquitin ligase-like protein 0.0
Putative N-terminus
uagpf_v2_unigene39735 uagpf v2.0 400
AutoFact: Zinc finger, RING-type n=1 Tax=Medicago truncatula RepID=A2Q4Q8_MEDTR 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: ring finger protein 0.0
N-terminus
uagpf_v2_unigene39783 uagpf v2.0 422
AutoFact: DNMT1-RFD multi-domain protein 4.0e-18
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Blast2go: enhanced downy mildew 2 0.0
Internal
uagpf_v2_unigene39786 uagpf v2.0 288
AutoFact: cohesin loading factor subunit SCC2 [Arabidopsis thaliana] gb|ABQ12620.1| sister chromatid cohesion 2 [Arabidopsis thaliana] gb|AED92174.1| cohesin loading factor subunit SCC2 [Arabidopsis thaliana] 0.0
FL-Next: tr=Putative uncharacterized protein Sb02g000990; Sorghum bicolor (Sorghum) (Sorghum vulgare). 0.0
Blast2go: cohesin loading factor subunit scc2 0.0
Internal
uagpf_v2_unigene39837 uagpf v2.0 288
AutoFact: Transcription factor, putative n=1 Tax=Ricinus communis RepID=B9RF92_RICCO 1.0e-36
FL-Next: tr=AT1G09060 protein; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: transcription factor jumonji domain-containing protein 2.30187e-37
Internal
uagpf_v2_unigene39838 uagpf v2.0 389
AutoFact: Zinc finger protein, putative n=1 Tax=Ricinus communis RepID=B9SK22_RICCO 0.0
Blast2go: protein 0.0
Coding
uagpf_v2_unigene39842 uagpf v2.0 386
AutoFact: transcription factor jumonji domain-containing protein [Arabidopsis thaliana] dbj|BAH30353.1| hypothetical protein [Arabidopsis thaliana] gb|AEE33952.1| transcription factor jumonji domain-containing protein [Arabidopsis thaliana] 0.0
FL-Next: tr=Transcription factor jumonji domain-containing protein; Arabidopsis lyrata subsp. lyrata (Lyre-leaved rock-cress). 0.0
Blast2go: protein 0.0
Internal

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain