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Assembly Name: uagpf v2.0

Name: WD40 repeat

Term: IPR001680  Help

Source: InterPro from Sma3


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
uagpf_v2_unigene5830 uagpf v2.0 764
AutoFact: Phosphorylase-like protein protein [Arabidopsis thaliana] gb|AEE85565.1| Phosphorylase-like protein protein [Arabidopsis thaliana] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: bark storage protein a-like 0.0
C-terminus
uagpf_v2_unigene5836 uagpf v2.0 262
AutoFact: WD40 domain-containing protein [Arabidopsis thaliana] gb|AAU94425.1| At1g65030 [Arabidopsis thaliana] gb|AEE34317.1| WD40 domain-containing protein [Arabidopsis thaliana] 0.0
Blast2go: p21-activated protein kinase-interacting protein 1-like 0.0
unknown
uagpf_v2_unigene5993 uagpf v2.0 370
AutoFact: DNA damage-binding protein 2 [Arabidopsis thaliana] sp|Q6NQ88.1|DDB2_ARATH RecName: Full=Protein DAMAGED DNA-BINDING 2; AltName: Full=UV-damaged DNA-binding protein 2 gb|AAQ65193.1| At5g58760 [Arabidopsis thaliana] dbj|BAD42887.1| putative protein [Arabid 0.0
Blast2go: protein damaged dna-binding 2 0.0
unknown
uagpf_v2_unigene6055 uagpf v2.0 978
AutoFact: [R] COG2319 FOG: WD40 repeat 4.0e-07
FL-Next: sp=Protein TOPLESS; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: wd repeat-containing 0.0
C-terminus
uagpf_v2_unigene6078 uagpf v2.0 1049
AutoFact: Unassigned protein
FL-Next: tr=Predicted protein; Physcomitrella patens subsp. patens (Moss). 0.0
Blast2go: enhancer of mrna-decapping protein 4-like 0.0
C-terminus
uagpf_v2_unigene6199 uagpf v2.0 1726
AutoFact: protein transport SEC13-like protein [Solanum tuberosum] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: protein sec13 homolog 0.0
Complete
uagpf_v2_unigene6246 uagpf v2.0 597
AutoFact: Nucleotide binding protein, putative n=1 Tax=Ricinus communis RepID=B9RDD1_RICCO 0.0
FL-Next: tr=Predicted protein; subsp. trichocarpa). 0.0
Blast2go: protein 0.0
C-terminus
uagpf_v2_unigene6265 uagpf v2.0 628
AutoFact: Guanine nucleotide-binding protein subunit beta-like protein n=4 Tax=rosids RepID=GBLP_SOYBN 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: receptor of activated protein kinase c component of 40s small ribosomal subunit 0.0
C-terminus
uagpf_v2_unigene6272 uagpf v2.0 787
AutoFact: WD-40 repeat protein-like [Oryza sativa Japonica Group] gb|EAZ41606.1| hypothetical protein OsJ_26138 [Oryza sativa Japonica Group] 0.0
FL-Next: Isoform 1 of Topless-related protein 1 OS=Arabidopsis thaliana GN=TPR1 0.0
Blast2go: wd repeat-containing 0.0
C-terminus
uagpf_v2_unigene6286 uagpf v2.0 733
AutoFact: Eukaryotic translation initiation factor 3 subunit, putative n=1 Tax=Ricinus communis RepID=B9S7C0_RICCO 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: protein 0.0
N-terminus
uagpf_v2_unigene6312 uagpf v2.0 728
AutoFact: cellulose synthase 6 [Populus tremuloides] 0.0
Blast2go: cellulose synthase 0.0
unknown
uagpf_v2_unigene6358 uagpf v2.0 1777
AutoFact: coatomer subunit alpha-1 [Arabidopsis thaliana] sp|Q94A40.2|COPA1_ARATH RecName: Full=Coatomer subunit alpha-1; AltName: Full=Alpha-coat protein 1; Short=Alpha-COP 1 gb|AAC28519.1| Strong similarity to coatamer alpha subunit (HEPCOP) homolog gb|U24105 fro 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Putative C-terminus
uagpf_v2_unigene6433 uagpf v2.0 568
AutoFact: Eukaryotic translation initiation factor 3 subunit, putative n=1 Tax=Ricinus communis RepID=B9S7C0_RICCO 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: protein 0.0
C-terminus
uagpf_v2_unigene6453 uagpf v2.0 544
AutoFact: cell cycle arrest protein BUB3 [Arabidopsis thaliana] dbj|BAB02543.1| mitotic checkpoint protein [Arabidopsis thaliana] gb|AAM64953.1| mitotic checkpoint protein, putative [Arabidopsis thaliana] gb|AAO42274.1| putative mitotic checkpoint protein [Arabidop 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: mitotic checkpoint protein 0.0
C-terminus
uagpf_v2_unigene6581 uagpf v2.0 418
AutoFact: splicing factor 3B subunit 3 [Arabidopsis thaliana] ref|NP_567016.1| putative splicing factor [Arabidopsis thaliana] emb|CAB75754.1| spliceosomal-like protein [Arabidopsis thaliana] emb|CAB75756.1| spliceosomal-like protein [Arabidopsis thaliana] gb|AEE79 1.96182e-44
FL-Next: sp=DNA damage-binding protein 1a; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: protein 0.0
Internal
uagpf_v2_unigene6600 uagpf v2.0 691
AutoFact: transducin/WD40 domain-containing protein [Arabidopsis thaliana] dbj|BAB02018.1| WD40-repeat protein [Arabidopsis thaliana] gb|AAL32514.1| WD40-repeat protein [Arabidopsis thaliana] gb|AAM47943.1| WD40-repeat protein [Arabidopsis thaliana] gb|AEE76041.1| 0.0
Blast2go: 66 kda stress protein 0.0
unknown
uagpf_v2_unigene6837 uagpf v2.0 601
AutoFact: Nucleotide binding protein, putative n=1 Tax=Ricinus communis RepID=B9T5V8_RICCO 0.0
Blast2go: protein 0.0
unknown
uagpf_v2_unigene6884 uagpf v2.0 1257
AutoFact: protein transport protein SEC31 [Arabidopsis thaliana] gb|AAM20553.1| putative protein [Arabidopsis thaliana] gb|AAP37794.1| At3g63460 [Arabidopsis thaliana] gb|AEE80486.1| protein transport protein SEC31 [Arabidopsis thaliana] 0.0
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Blast2go: protein transport protein sec31 0.0
Internal
uagpf_v2_unigene6929 uagpf v2.0 725
AutoFact: transducin-like protein [Arabidopsis thaliana] gb|AAK43883.1|AF370506_1 putative WD-40 repeat protein [Arabidopsis thaliana] gb|AAD10153.1| putative WD-40 repeat protein [Arabidopsis thaliana] gb|AAM91214.1| putative WD-40 repeat protein [Arabidopsis thal 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: glutamate-rich wd repeat-containing protein 1 0.0
N-terminus
uagpf_v2_unigene6990 uagpf v2.0 593
AutoFact: WD-repeat protein, putative n=1 Tax=Ricinus communis RepID=B9T7M5_RICCO 0.0
FL-Next: tr=Predicted protein; Physcomitrella patens subsp. patens (Moss). 0.0
Blast2go: wd repeat-containing protein 44-like 0.0
C-terminus

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain