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Assembly Name: uagpf v2.0

Name: WD40 repeat

Term: IPR001680  Help

Source: InterPro from Sma3


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
uagpf_v2_unigene50052 uagpf v2.0 303
AutoFact: WD-repeat protein, putative n=1 Tax=Ricinus communis RepID=B9S411_RICCO 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: wd40 repeat compass complex protein 0.0
Internal
uagpf_v2_unigene50063 uagpf v2.0 454
AutoFact: Unassigned protein
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Putative N-terminus
uagpf_v2_unigene50185 uagpf v2.0 344
AutoFact: cellulose synthase 6 [Populus tremuloides] 0.0
Blast2go: cellulose synthase 0.0
unknown
uagpf_v2_unigene50186 uagpf v2.0 379
AutoFact: Guanine nucleotide-binding protein subunit beta-1 n=9 Tax=core eudicotyledons RepID=GBB1_TOBAC 0.0
Blast2go: g protein beta subunit 0.0
Putative coding
uagpf_v2_unigene50249 uagpf v2.0 310
AutoFact: pfam12490, BCAS3, Breast carcinoma amplified sequence 3 4.0e-23
Blast2go: protein 2.43218e-16
unknown
uagpf_v2_unigene50508 uagpf v2.0 309
AutoFact: Transducin/WD-40 repeat-containing protein n=1 Tax=Arabidopsis thaliana RepID=Q680F0_ARATH 1.0e-10
unknown
uagpf_v2_unigene50530 uagpf v2.0 380
AutoFact: cellulose synthase 6 [Eucalyptus grandis] 0.0
FL-Next: tr=Cellulose synthase; Pinus radiata (Monterey pine) (Pinus insignis). 0.0
Blast2go: family 2 glycosyltransferase 0.0
Internal
uagpf_v2_unigene50591 uagpf v2.0 437
AutoFact: Unassigned protein
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Blast2go: protein 0.0
Internal
uagpf_v2_unigene50641 uagpf v2.0 140
AutoFact: putative WD-repeat protein [Arabidopsis thaliana] 2.0e-06
Blast2go: protein 3.38822e-09
unknown
uagpf_v2_unigene50665 uagpf v2.0 114
AutoFact: Periodic tryptophan protein-associated region; WD40-like [Medicago truncatula] 0.0
Blast2go: periodic tryptophan protein 2 0.0
unknown
uagpf_v2_unigene50911 uagpf v2.0 344
AutoFact: RecName: Full=Coatomer subunit alpha-2; AltName: Full=Alpha-coat protein 2; Short=Alpha-COP 2 gb|AAK18837.1|AC082645_7 putative alpha-coat protein [Oryza sativa Japonica Group] gb|ABF98514.1| Coatomer alpha subunit, putative, expressed [Oryza sativa Japon 9.99995e-41
FL-Next: sp=Coatomer subunit alpha-3; Oryza sativa subsp. japonica (Rice). 0.0
Blast2go: protein 3.54529e-43
Internal
uagpf_v2_unigene51062 uagpf v2.0 812
AutoFact: WD-40 repeat protein-like n=7 Tax=Poaceae RepID=Q7EYE2_ORYSJ 8.0e-24
FL-Next: sp=Topless-related protein 2; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: protein 9.61252e-27
Putative C-terminus
uagpf_v2_unigene51121 uagpf v2.0 539
AutoFact: Unassigned protein
FL-Next: sp=U3 small nucleolar RNA-associated protein 18 homolog; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: u3 small nucleolar rna-associated protein 18 homolog 0.0
C-terminus
uagpf_v2_unigene51140 uagpf v2.0 556
AutoFact: peroxisomal targeting signal type 2 receptor [Solanum lycopersicum] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: peroxin 7 0.0
C-terminus
uagpf_v2_unigene51182 uagpf v2.0 487
AutoFact: Unassigned protein
FL-Next: tr=Predicted protein; Physcomitrella patens subsp. patens (Moss). 0.0
Blast2go: protein 0.0
C-terminus
uagpf_v2_unigene51246 uagpf v2.0 588
AutoFact: transducin/WD40 domain-containing protein [Arabidopsis thaliana] emb|CAC01754.1| putative protein [Arabidopsis thaliana] gb|AAL36367.1| unknown protein [Arabidopsis thaliana] gb|AAM14196.1| unknown protein [Arabidopsis thaliana] gb|AED92176.1| transducin/ 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: ribosome biogenesis protein wdr12 homolog 0.0
N-terminus
uagpf_v2_unigene51254 uagpf v2.0 316
AutoFact: cellulose synthase 6 [Populus tremuloides] 0.0
Blast2go: cellulose synthase 0.0
unknown
uagpf_v2_unigene51276 uagpf v2.0 429
AutoFact: Unassigned protein
FL-Next: tr=Transducin/WD40 domain-containing protein; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: wd repeat-containing 0.0
C-terminus
uagpf_v2_unigene51330 uagpf v2.0 515
AutoFact: Nucleotide binding protein, putative n=1 Tax=Ricinus communis RepID=B9T5V8_RICCO 0.0
Blast2go: protein 0.0
unknown
uagpf_v2_unigene51406 uagpf v2.0 449
AutoFact: pfam00400, WD40, WD domain, G-beta repeat 1.0e-07
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: transcriptional corepressor leunig 0.0
Complete

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain