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Assembly Name: uagpf v2.0

Name: WD40 repeat

Term: IPR001680  Help

Source: InterPro from Sma3


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
uagpf_v2_unigene2304 uagpf v2.0 999
AutoFact: transducin/WD40 domain-containing protein [Arabidopsis thaliana] gb|ACI46510.1| At5g11240 [Arabidopsis thaliana] gb|AED91651.1| transducin/WD40 domain-containing protein [Arabidopsis thaliana] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: wd40 repeat-containing protein smu1 0.0
Putative Complete
uagpf_v2_unigene2316 uagpf v2.0 903
AutoFact: Nucleotide binding protein, putative n=1 Tax=Ricinus communis RepID=B9T5V8_RICCO 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: protein 0.0
Putative C-terminus
uagpf_v2_unigene2402 uagpf v2.0 502
AutoFact: WD-repeat protein, putative 6.0e-19
Blast2go: uncharacterized wd repeat-containing 2.80609e-24
Putative coding
uagpf_v2_unigene2444 uagpf v2.0 184
AutoFact: Unassigned protein
FL-Next: sp=U3 small nucleolar RNA-associated protein 18 homolog; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: u3 small nucleolar rna-associated protein 18 homolog 0.0
Internal
uagpf_v2_unigene2471 uagpf v2.0 342
AutoFact: transducin/WD-40 repeat-containing protein [Arabidopsis thaliana] gb|AAK50091.1|AF372951_1 At1g78070/F28K19_28 [Arabidopsis thaliana] gb|AAN72242.1| At1g78070/F28K19_28 [Arabidopsis thaliana] gb|AEE36064.1| transducin/WD-40 repeat-containing protein [Arab 0.0
Blast2go: protein 0.0
unknown
uagpf_v2_unigene2557 uagpf v2.0 1360
AutoFact: Unassigned protein
FL-Next: tr=Predicted protein; subsp. trichocarpa). 0.0
Blast2go: protein 0.0
C-terminus
uagpf_v2_unigene2638 uagpf v2.0 459
AutoFact: O-fucosyltransferase family protein [Arabidopsis thaliana] gb|AAQ89634.1| At1g14020 [Arabidopsis thaliana] dbj|BAF01665.1| growth regulator like protein [Arabidopsis thaliana] dbj|BAF01818.1| growth regulator like protein [Arabidopsis thaliana] gb|AEE2909 0.0
FL-Next: tr=Putative uncharacterized protein; Selaginella moellendorffii (Spikemoss). 0.0
Blast2go: duf246 domain-containing protein at1g04910-like 0.0
N-terminus
uagpf_v2_unigene2662 uagpf v2.0 446
AutoFact: Unassigned protein
Blast2go: wd repeat-containing 0.0
unknown
uagpf_v2_unigene2664 uagpf v2.0 649
AutoFact: zinc finger CCCH domain-containing protein 63 [Arabidopsis thaliana] dbj|BAB11046.1| unnamed protein product [Arabidopsis thaliana] gb|AED96154.1| zinc finger CCCH domain-containing protein 63 [Arabidopsis thaliana] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: zinc finger ccch domain-containing protein 48 0.0
Putative C-terminus
uagpf_v2_unigene2690 uagpf v2.0 764
AutoFact: Zinc finger CCCH domain-containing protein 17 n=4 Tax=Oryza sativa RepID=C3H17_ORYSJ 0.0
Blast2go: zinc finger ccch domain-containing protein 48 0.0
unknown
uagpf_v2_unigene2707 uagpf v2.0 719
AutoFact: Nucleotide binding protein, putative n=1 Tax=Ricinus communis RepID=B9RDD1_RICCO 0.0
FL-Next: tr=Transducin family protein; Arabidopsis lyrata subsp. lyrata (Lyre-leaved rock-cress). 0.0
Blast2go: protein 0.0
N-terminus
uagpf_v2_unigene2781 uagpf v2.0 1408
AutoFact: coatomer subunit beta'-2 [Arabidopsis thaliana] sp|Q9C827.1|COB22_ARATH RecName: Full=Coatomer subunit beta'-2; AltName: Full=Beta'-coat protein 2; Short=Beta'-COP 2 gb|AAG51545.1|AC037424_10 coatomer complex subunit, putative; 33791-27676 [Arabidopsis th 0.0
FL-Next: sp=Coatomer subunit beta'-1; Oryza sativa subsp. japonica (Rice). 0.0
Internal
uagpf_v2_unigene2811 uagpf v2.0 759
AutoFact: transducin/WD-40 repeat-containing protein [Arabidopsis thaliana] gb|AAM13156.1| unknown protein [Arabidopsis thaliana] gb|AAN15609.1| unknown protein [Arabidopsis thaliana] gb|AEE29984.1| transducin/WD-40 repeat-containing protein [Arabidopsis thaliana] 0.0
FL-Next: sp=WD repeat-containing protein DWA2; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: transducin family protein 0.0
N-terminus
uagpf_v2_unigene2875 uagpf v2.0 396
AutoFact: Serine/threonine-protein phosphatase (Fragment) n=5 Tax=Magnoliophyta RepID=D7T1Q5_VITVI 0.0
FL-Next: sp=Serine/threonine-protein phosphatase; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: serine threonine-protein phosphatase bsl2-like 0.0
Putative N-terminus
uagpf_v2_unigene3083 uagpf v2.0 608
AutoFact: transducin/WD-40 repeat-containing protein [Arabidopsis thaliana] ref|NP_850516.1| transducin/WD-40 repeat-containing protein [Arabidopsis thaliana] gb|AAL07141.1| unknown protein [Arabidopsis thaliana] gb|AAM83246.1| AT3g05090/T12H1_5 [Arabidopsis thalia 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: wd repeat-containing protein 48-like 0.0
Putative C-terminus
uagpf_v2_unigene3098 uagpf v2.0 453
AutoFact: Histone H3 methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 n=1 Tax=Physcomitrella patens subsp. patens RepID=A9SRV1_PHYPA 0.0
FL-Next: tr=Putative uncharacterized protein; Selaginella moellendorffii (Spikemoss). 0.0
Blast2go: histone h3 methyltransferase complex and rna cleavage factor ii subunit swd2 0.0
C-terminus
uagpf_v2_unigene3104 uagpf v2.0 693
AutoFact: Nucleotide binding protein, putative n=1 Tax=Ricinus communis RepID=B9SA71_RICCO 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: retinoblastoma-binding protein 5-like 0.0
N-terminus
uagpf_v2_unigene3179 uagpf v2.0 1001
AutoFact: O-fucosyltransferase family protein [Arabidopsis thaliana] emb|CAB70984.1| putative protein [Arabidopsis thaliana] gb|AEE79188.1| O-fucosyltransferase family protein [Arabidopsis thaliana] 3.0e-29
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: protein 2.13068e-38
Putative N-terminus
uagpf_v2_unigene3187 uagpf v2.0 864
AutoFact: Unassigned protein
FL-Next: sp=Topless-related protein 4; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: protein 0.0
C-terminus
uagpf_v2_unigene3212 uagpf v2.0 505
AutoFact: O-fucosyltransferase family protein [Arabidopsis thaliana] gb|AAQ89634.1| At1g14020 [Arabidopsis thaliana] dbj|BAF01665.1| growth regulator like protein [Arabidopsis thaliana] dbj|BAF01818.1| growth regulator like protein [Arabidopsis thaliana] gb|AEE2909 1.0e-14
Blast2go: protein 1.35613e-15
unknown

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain