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Assembly Name: uagpf v2.0

Name: WD40 repeat

Term: IPR001680  Help

Source: InterPro from Sma3


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
uagpf_v2_unigene36655 uagpf v2.0 424
AutoFact: transducin/WD40 domain-containing protein [Arabidopsis thaliana] ref|NP_001078546.1| transducin/WD40 domain-containing protein [Arabidopsis thaliana] dbj|BAB10005.1| WD-repeat protein-like [Arabidopsis thaliana] gb|AAK96726.1| WD-repeat protein-like [Arab 0.0
Blast2go: wd repeat-containing protein 26-like 0.0
unknown
uagpf_v2_unigene36741 uagpf v2.0 388
AutoFact: coatomer subunit alpha-1 [Arabidopsis thaliana] sp|Q94A40.2|COPA1_ARATH RecName: Full=Coatomer subunit alpha-1; AltName: Full=Alpha-coat protein 1; Short=Alpha-COP 1 gb|AAC28519.1| Strong similarity to coatamer alpha subunit (HEPCOP) homolog gb|U24105 fro 0.0
FL-Next: sp=Coatomer subunit alpha-2; Arabidopsis thaliana (Mouse-ear cress). 0.0
Internal
uagpf_v2_unigene36775 uagpf v2.0 384
AutoFact: tryptophan aminotransferase related 2 [Arabidopsis thaliana] ref|NP_974608.1| tryptophan aminotransferase related 2 [Arabidopsis thaliana] gb|AAK92714.1| putative alliin lyase [Arabidopsis thaliana] gb|AAM14394.1| putative alliin lyase [Arabidopsis thalia 0.0
FL-Next: sp=Tryptophan aminotransferase-related protein 2; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: alliin lyase 0.0
Internal
uagpf_v2_unigene36784 uagpf v2.0 408
AutoFact: [R] COG2319 FOG: WD40 repeat 0.0
FL-Next: tr=Autophagy-related protein 18b; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: autophagy-related protein 18-like 0.0
Putative C-terminus
uagpf_v2_unigene36815 uagpf v2.0 473
AutoFact: transducin/WD40 domain-containing protein [Arabidopsis thaliana] gb|AEE82568.1| transducin/WD40 domain-containing protein [Arabidopsis thaliana] 0.0
FL-Next: tr=Predicted protein; subsp. trichocarpa). 0.0
Blast2go: transducin wd40 domain-containing protein 0.0
C-terminus
uagpf_v2_unigene36827 uagpf v2.0 666
AutoFact: WD40 domain-containing protein [Arabidopsis thaliana] gb|AAK32933.1|AF367346_1 At2g20330/F11A3.12 [Arabidopsis thaliana] gb|AAL16252.1|AF428322_1 At2g20330/F11A3.12 [Arabidopsis thaliana] gb|AAD21755.1| putative WD-40 repeat protein [Arabidopsis thaliana] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: wd repeat-containing protein 70-like 0.0
Internal
uagpf_v2_unigene36932 uagpf v2.0 481
AutoFact: Unassigned protein
FL-Next: tr=Predicted protein; subsp. trichocarpa). 0.0
Blast2go: protein 0.0
Putative N-terminus
uagpf_v2_unigene37043 uagpf v2.0 468
AutoFact: transducin/WD-40 repeat-containing protein [Arabidopsis thaliana] gb|AAL09795.1| At1g27840/F28L5_15 [Arabidopsis thaliana] gb|AAL66962.1| unknown protein [Arabidopsis thaliana] gb|AAM20274.1| unknown protein [Arabidopsis thaliana] gb|AEE30881.1| transduci 4.0e-35
FL-Next: tr=Putative uncharacterized protein F28L5.15; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: transducin wd-40 repeat-containing protein 1.88194e-42
Putative N-terminus
uagpf_v2_unigene37060 uagpf v2.0 476
AutoFact: P-loop containing nucleoside triphosphate hydrolase-like protein [Arabidopsis thaliana] emb|CAB62469.1| kinesin-like protein [Arabidopsis thaliana] gb|AEE78572.1| P-loop containing nucleoside triphosphate hydrolase-like protein [Arabidopsis thaliana] 0.0
FL-Next: tr=Chromosome-associated kinesin KIF4A, putative; Ricinus communis (Castor bean). 0.0
Blast2go: chromosome-associated kinesin 0.0
Internal
uagpf_v2_unigene37327 uagpf v2.0 567
AutoFact: WD-repeat protein, putative n=1 Tax=Ricinus communis RepID=B9SAP3_RICCO 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: protein 0.0
Putative C-terminus
uagpf_v2_unigene37412 uagpf v2.0 442
AutoFact: Type II inositol 5-phosphatase, putative n=1 Tax=Ricinus communis RepID=B9RM01_RICCO 5.0e-13
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: type ii inositol 5- 2.4895e-16
Internal
uagpf_v2_unigene37428 uagpf v2.0 461
AutoFact: Unassigned protein
FL-Next: Isoform 1 of Topless-related protein 1 OS=Arabidopsis thaliana GN=TPR1 0.0
Blast2go: ramosa 1 enhancer locus 2 0.0
Internal
uagpf_v2_unigene37460 uagpf v2.0 455
AutoFact: transcription initiation factor TFIID subunit D4 [Arabidopsis thaliana] gb|AAR28022.1| TAF5 [Arabidopsis thaliana] gb|AED93406.1| transcription initiation factor TFIID subunit D4 [Arabidopsis thaliana] 0.0
FL-Next: tr=Predicted protein; subsp. trichocarpa). 0.0
Blast2go: transcription initiation factor tfiid subunit 5-like 0.0
C-terminus
uagpf_v2_unigene37518 uagpf v2.0 437
AutoFact: DNA damage-binding protein 2 [Arabidopsis thaliana] sp|Q6NQ88.1|DDB2_ARATH RecName: Full=Protein DAMAGED DNA-BINDING 2; AltName: Full=UV-damaged DNA-binding protein 2 gb|AAQ65193.1| At5g58760 [Arabidopsis thaliana] dbj|BAD42887.1| putative protein [Arabid 0.0
FL-Next: sp=Protein DAMAGED DNA-BINDING 2; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: protein damaged dna-binding 2 0.0
N-terminus
uagpf_v2_unigene37778 uagpf v2.0 519
AutoFact: Ataxia telangiectasia mutated, putative n=1 Tax=Ricinus communis RepID=B9RB21_RICCO 0.0
FL-Next: sp=Serine/threonine-protein kinase ATM; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: serine-protein kinase atm 0.0
C-terminus
uagpf_v2_unigene37953 uagpf v2.0 572
AutoFact: Unassigned protein
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: unknown [Picea sitchensis] 3.63889e-19
N-terminus
uagpf_v2_unigene37968 uagpf v2.0 501
AutoFact: transducin/WD-40 repeat-containing protein [Arabidopsis thaliana] gb|AAC27402.2| expressed protein [Arabidopsis thaliana] gb|AAM65204.1| unknown [Arabidopsis thaliana] dbj|BAC42145.1| unknown protein [Arabidopsis thaliana] gb|AAO63858.1| putative G-protei 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: wd repeat-containing protein 55-like 0.0
N-terminus
uagpf_v2_unigene37979 uagpf v2.0 635
AutoFact: protein FIZZY-related 3 [Arabidopsis thaliana] ref|NP_001190305.1| protein FIZZY-related 3 [Arabidopsis thaliana] sp|Q8LPL5.1|FZR3_ARATH RecName: Full=Protein FIZZY-RELATED 3; AltName: Full=Cell cycle switch protein CCS52B gb|AAM20433.1| cell cycle switch 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: protein 0.0
Internal
uagpf_v2_unigene38177 uagpf v2.0 412
AutoFact: elongator protein 2 [Arabidopsis thaliana] gb|AEE32440.1| elongator protein 2 [Arabidopsis thaliana] 0.0
FL-Next: tr=Os08g0493900 protein; Oryza sativa subsp. japonica (Rice). 0.0
Blast2go: elongator protein 2 0.0
Internal
uagpf_v2_unigene38213 uagpf v2.0 523
AutoFact: MSI type nucleosome/chromatin assembly factor C [Zea mays] gb|AAL33648.1|AF440219_1 MSI type nucleosome/chromatin assembly factor C [Zea mays] gb|ACN33308.1| unknown [Zea mays] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: nucleosome chromatin assembly factor group 0.0
Internal

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain