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Assembly Name: uagpf v2.0

Name: WD40 repeat

Term: IPR001680  Help

Source: InterPro from Sma3


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
uagpf_v2_unigene11600 uagpf v2.0 659
AutoFact: WD40 repeat protein [Ipomoea purpurea] dbj|BAE94399.1| WD40 repeat protein [Ipomoea nil] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: protein 0.0
Putative N-terminus
uagpf_v2_unigene11633 uagpf v2.0 753
AutoFact: protein transport protein SEC31 [Arabidopsis thaliana] gb|AAM20553.1| putative protein [Arabidopsis thaliana] gb|AAP37794.1| At3g63460 [Arabidopsis thaliana] gb|AEE80486.1| protein transport protein SEC31 [Arabidopsis thaliana] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: protein transport protein sec31 0.0
Putative C-terminus
uagpf_v2_unigene11716 uagpf v2.0 1059
AutoFact: prolactin regulatory element-binding protein [Arabidopsis thaliana] sp|Q39221.4|STLP2_ARATH RecName: Full=SEC12-like protein 2 gb|AAC67323.1| putative protein transport protein SEC12p [Arabidopsis thaliana] gb|AAL67028.1| putative protein transport protei 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: protein 0.0
C-terminus
uagpf_v2_unigene11735 uagpf v2.0 786
AutoFact: transducin/WD40 domain-containing protein [Arabidopsis thaliana] gb|AAL86343.1| unknown protein [Arabidopsis thaliana] gb|AAM91698.1| unknown protein [Arabidopsis thaliana] gb|AEE82567.1| transducin/WD40 domain-containing protein [Arabidopsis thaliana] 7.0e-28
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: protein 0.0
N-terminus
uagpf_v2_unigene11761 uagpf v2.0 321
AutoFact: sae68g11.y1 Gm-c1064 Glycine max cDNA clone GENOME SYSTEMS CLONE ID: Gm-c1064-3406 5' similar to TR:Q9ZQD2 Q9ZQD2 T2N18.8 PROTEIN. ;, mRNA sequence. 4.0e-12
FL-Next: tr=Predicted protein; subsp. trichocarpa). 0.0
Putative N-terminus
uagpf_v2_unigene11964 uagpf v2.0 529
AutoFact: WD-40 repeat protein-like [Oryza sativa Japonica Group] gb|EAZ41606.1| hypothetical protein OsJ_26138 [Oryza sativa Japonica Group] 1.0e-34
FL-Next: sp=Protein TOPLESS; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: protein topless 1.4013e-45
C-terminus
uagpf_v2_unigene11990 uagpf v2.0 1018
AutoFact: Guanine nucleotide-binding protein subunit beta-like protein n=4 Tax=rosids RepID=GBLP_SOYBN 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: receptor of activated protein kinase c component of 40s small ribosomal subunit 0.0
N-terminus
uagpf_v2_unigene12007 uagpf v2.0 711
AutoFact: Tyrosyl-tRNA synthetase n=3 Tax=Zea mays RepID=B6T638_MAIZE 0.0
FL-Next: tr=Tyrosyl-tRNA synthetase; Zea mays (Maize). 0.0
Blast2go: tyrosyl-trna synthetase 0.0
C-terminus
uagpf_v2_unigene12124 uagpf v2.0 1024
AutoFact: transducin/WD40 domain-containing protein [Arabidopsis thaliana] emb|CAC01754.1| putative protein [Arabidopsis thaliana] gb|AAL36367.1| unknown protein [Arabidopsis thaliana] gb|AAM14196.1| unknown protein [Arabidopsis thaliana] gb|AED92176.1| transducin/ 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: ribosome biogenesis protein wdr12 homolog 0.0
N-terminus
uagpf_v2_unigene12290 uagpf v2.0 828
AutoFact: coatomer subunit alpha-1 [Arabidopsis thaliana] sp|Q94A40.2|COPA1_ARATH RecName: Full=Coatomer subunit alpha-1; AltName: Full=Alpha-coat protein 1; Short=Alpha-COP 1 gb|AAC28519.1| Strong similarity to coatamer alpha subunit (HEPCOP) homolog gb|U24105 fro 0.0
FL-Next: sp=Coatomer subunit alpha-2; Arabidopsis thaliana (Mouse-ear cress). 0.0
N-terminus
uagpf_v2_unigene12328 uagpf v2.0 598
AutoFact: Bromodomain domain containing protein 2.0e-06
FL-Next: tr=Expressed protein; Oryza sativa subsp. japonica (Rice). 0.0
Blast2go: bromodomain and wd repeat-containing protein 0.0
C-terminus
uagpf_v2_unigene12369 uagpf v2.0 268
AutoFact: Unassigned protein
FL-Next: tr=Predicted protein; Physcomitrella patens subsp. patens (Moss). 0.0
Blast2go: protein 0.0
Internal
uagpf_v2_unigene12409 uagpf v2.0 808
AutoFact: Unassigned protein
Blast2go: protein 0.0
unknown
uagpf_v2_unigene12416 uagpf v2.0 540
AutoFact: peroxisomal targeting signal type 2 receptor [Solanum lycopersicum] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: peroxin 7 0.0
N-terminus
uagpf_v2_unigene12483 uagpf v2.0 760
AutoFact: NLE multi-domain protein 3.0e-12
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: notchless protein homolog 0.0
Complete
uagpf_v2_unigene12518 uagpf v2.0 1073
AutoFact: transducin/WD40 domain-containing protein [Arabidopsis thaliana] gb|AAK92820.1| unknown protein [Arabidopsis thaliana] gb|AAL08286.1| AT4g18900/F13C5_70 [Arabidopsis thaliana] gb|AAM44990.1| unknown protein [Arabidopsis thaliana] gb|AEE84104.1| transducin 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: transducin wd40 domain-containing protein 0.0
C-terminus
uagpf_v2_unigene12522 uagpf v2.0 674
AutoFact: transducin/WD40 domain-containing protein [Arabidopsis thaliana] ref|NP_001189878.1| transducin/WD40 domain-containing protein [Arabidopsis thaliana] gb|AAK82560.1| AT3g13340/MDC11_13 [Arabidopsis thaliana] gb|AAM98109.1| At3g13340/MDC11_13 [Arabidopsis t 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: protein 0.0
C-terminus
uagpf_v2_unigene12529 uagpf v2.0 530
AutoFact: pfam00400, WD40, WD domain, G-beta repeat 1.0e-07
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: transcriptional corepressor leunig 0.0
Complete
uagpf_v2_unigene12536 uagpf v2.0 709
AutoFact: transducin/WD-40 repeat-containing protein [Arabidopsis thaliana] gb|AAK50091.1|AF372951_1 At1g78070/F28K19_28 [Arabidopsis thaliana] gb|AAN72242.1| At1g78070/F28K19_28 [Arabidopsis thaliana] gb|AEE36064.1| transducin/WD-40 repeat-containing protein [Arab 0.0
Blast2go: protein 0.0
unknown
uagpf_v2_unigene12649 uagpf v2.0 799
AutoFact: Coatomer alpha subunit n=1 Tax=Hordeum vulgare subsp. vulgare RepID=Q6RYF4_HORVD 0.0
FL-Next: tr=Putative uncharacterized protein; Zea mays (Maize). 0.0
Blast2go: coatomer alpha 0.0
Complete

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain