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Assembly Name: uagpf v2.0

Name: Parallel beta-helix repeat

Term: IPR006626  Help

Source: InterPro from Sma3


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
uagpf_v2_unigene8567 uagpf v2.0 505
AutoFact: pfam04554, Extensin_2, Extensin-like region 2.0e-24
unknown
uagpf_v2_unigene8981 uagpf v2.0 449
AutoFact: Polygalacturonase, putative n=1 Tax=Ricinus communis RepID=B9SSX2_RICCO 5.0e-13
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: polygalacturonase 3.72013e-15
Putative N-terminus
uagpf_v2_unigene9402 uagpf v2.0 638
AutoFact: pectate lyase [Gossypium hirsutum] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: pectate lyase 0.0
C-terminus
uagpf_v2_unigene9881 uagpf v2.0 633
AutoFact: Polygalacturonase n=1 Tax=Cucumis melo RepID=O81245_CUCME 4.0e-08
FL-Next: sp=Polygalacturonase; Chamaecyparis obtusa (Hinoki false-cypress). 0.0
Blast2go: endo-polygalacturonase 5.16914e-09
Putative C-terminus
uagpf_v2_unigene10208 uagpf v2.0 1546
AutoFact: glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] gb|AAG40344.1|AF324992_1 AT3g62110 [Arabidopsis thaliana] gb|AAN31866.1| unknown protein [Arabidopsis thaliana] gb|AEE80311.1| glycoside hydrolase 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: probable polygalacturonase-like 0.0
Putative C-terminus
uagpf_v2_unigene11131 uagpf v2.0 1899
AutoFact: glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] gb|AAG40344.1|AF324992_1 AT3g62110 [Arabidopsis thaliana] gb|AAN31866.1| unknown protein [Arabidopsis thaliana] gb|AEE80311.1| glycoside hydrolase 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: probable polygalacturonase-like 0.0
Complete
uagpf_v2_unigene11808 uagpf v2.0 1797
AutoFact: Reverse transcriptase n=1 Tax=Picea glauca RepID=Q9M5J7_PICGL 0.0
FL-Next: tr=Reverse transcriptase; Picea glauca (White spruce) (Pinus glauca). 0.0
Blast2go: gag-pol polyprotein 0.0
C-terminus
uagpf_v2_unigene12086 uagpf v2.0 652
AutoFact: polygalacturonase 5 [Solanum lycopersicum] 3.0e-23
FL-Next: sp=Polygalacturonase; Juniperus ashei (Ozark white cedar). 0.0
Blast2go: polygalacturonase 1.21649e-26
Putative C-terminus
uagpf_v2_unigene12588 uagpf v2.0 539
AutoFact: protein kinase MSK-3-like [Arabidopsis thaliana] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: shaggy-related protein kinase epsilon 0.0
N-terminus
uagpf_v2_unigene12920 uagpf v2.0 460
AutoFact: FAP multi-domain protein 2.0e-18
Coding
uagpf_v2_unigene12995 uagpf v2.0 577
AutoFact: Extensin_2 multi-domain protein 3.0e-23
Coding
uagpf_v2_unigene13680 uagpf v2.0 266
AutoFact: splicing factor 3A subunit 1 [Arabidopsis thaliana] ref|NP_001117289.1| splicing factor 3A subunit 1 [Arabidopsis thaliana] sp|Q8RXF1.2|SF3A1_ARATH RecName: Full=Probable splicing factor 3A subunit 1 dbj|BAE98583.1| putative splicing factor [Arabidopsis t 0.0
FL-Next: sp=Probable splicing factor 3A subunit 1; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: probable splicing factor 3a subunit 1-like 0.0
Internal
uagpf_v2_unigene13729 uagpf v2.0 459
AutoFact: splicing factor 3A subunit 1 [Arabidopsis thaliana] ref|NP_001117289.1| splicing factor 3A subunit 1 [Arabidopsis thaliana] sp|Q8RXF1.2|SF3A1_ARATH RecName: Full=Probable splicing factor 3A subunit 1 dbj|BAE98583.1| putative splicing factor [Arabidopsis t 0.0
Blast2go: probable splicing factor 3a subunit 1-like 0.0
unknown
uagpf_v2_unigene13974 uagpf v2.0 992
AutoFact: DNA-directed RNA polymerase n=3 Tax=Magnoliophyta RepID=B9FZ51_ORYSJ 3.9937e-43
Blast2go: dna-directed rna polymerase 0.0
Coding
uagpf_v2_unigene14392 uagpf v2.0 582
AutoFact: pectate lyase [Arabidopsis thaliana] gb|ACE95182.1| At3g55140 [Arabidopsis thaliana] gb|ACF04806.1| At3g55140 [Arabidopsis thaliana] gb|AEE79344.1| pectate lyase [Arabidopsis thaliana] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: probable pectate lyase 4-like 0.0
C-terminus
uagpf_v2_unigene14645 uagpf v2.0 573
AutoFact: Polygalacturonase n=2 Tax=Arabidopsis thaliana RepID=F4I672_ARATH 1.0e-12
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: pectin lyase-like protein 2.03339e-22
Putative N-terminus
uagpf_v2_unigene14766 uagpf v2.0 792
AutoFact: Drf_FH1 multi-domain protein 2.0e-23
Putative coding
uagpf_v2_unigene14825 uagpf v2.0 866
AutoFact: Polygalacturonase, putative n=1 Tax=Ricinus communis RepID=B9TA63_RICCO 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: probable polygalacturonase-like 0.0
C-terminus
uagpf_v2_unigene15288 uagpf v2.0 813
AutoFact: Polygalacturonase, putative n=1 Tax=Ricinus communis RepID=B9RCG6_RICCO 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: probable polygalacturonase-like 0.0
N-terminus
uagpf_v2_unigene15473 uagpf v2.0 1023
AutoFact: flocculin [Trichomonas vaginalis G3] gb|EAX95321.1| flocculin, putative [Trichomonas vaginalis G3] 1.0e-13
FL-Next: sp=DNA-directed RNA polymerase II subunit RPB1; Arabidopsis thaliana (Mouse-ear cress). 0.0
Internal

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain