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Assembly Name: uagpf v2.0

Name: Leucine-rich repeat 3

Term: IPR011713  Help

Source: InterPro from Sma3


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
uagpf_v2_unigene43927 uagpf v2.0 171
AutoFact: copia-type reverse transcriptase-like protein [Arabidopsis thaliana] 1.0e-36
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: copia-type polyprotein 3.58732e-43
Internal
uagpf_v2_unigene45463 uagpf v2.0 291
AutoFact: White-brown-complex ABC transporter family n=2 Tax=Populus trichocarpa RepID=B9IIG9_POPTR 3.0e-29
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: abc transporter g family member 22 1.19941e-36
Internal
uagpf_v2_unigene45620 uagpf v2.0 276
AutoFact: Putative truncated TIR-NBS-LRR protein n=1 Tax=Pinus monticola RepID=E9NZS7_PINMO 0.0
Blast2go: nbs lrr 0.0
unknown
uagpf_v2_unigene48461 uagpf v2.0 320
AutoFact: Strong similarity to the sucrose-phosphate synthase from Craterostigma plantagineum gb|Y11795 [Arabidopsis thaliana] 4.0e-07
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: sucrose-phosphate synthase 5.67942e-08
Internal
uagpf_v2_unigene48870 uagpf v2.0 430
AutoFact: NBS-LRR disease resistance protein homologue n=2 Tax=Hordeum vulgare RepID=Q84KC6_HORVU 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: protein 0.0
Internal
uagpf_v2_unigene50248 uagpf v2.0 438
AutoFact: plant intracellular ras group-related LRR 1 [Arabidopsis thaliana] dbj|BAB09679.1| unnamed protein product [Arabidopsis thaliana] gb|AAU95419.1| At5g05850 [Arabidopsis thaliana] gb|AAV59262.1| At5g05850 [Arabidopsis thaliana] gb|AAW57410.1| plant intracel 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: leucine-rich repeat-containing 0.0
Internal
uagpf_v2_unigene50422 uagpf v2.0 296
AutoFact: Reverse transcriptase (Fragment) n=1 Tax=Picea abies RepID=Q9FY10_PICAB 8.0e-35
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: reverse transcriptase 4.2039e-45
Internal
uagpf_v2_unigene50868 uagpf v2.0 262
AutoFact: Putative TIR/NBS/LRR disease resistance protein (Fragment) n=1 Tax=Pinus taeda RepID=Q8L8I7_PINTA 0.0
Blast2go: nbs lrr 0.0
unknown
uagpf_v2_unigene51378 uagpf v2.0 471
AutoFact: [S] COG4886 Leucine-rich repeat (LRR) protein 2.0e-08
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: protein 3.509e-37
Complete
uagpf_v2_unigene52588 uagpf v2.0 306
AutoFact: NBS [Pinus taeda] 9.0e-28
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: protein 0.0
Putative C-terminus
uagpf_v2_unigene53497 uagpf v2.0 338
AutoFact: RVT_2 domain containing protein 1.0e-21
FL-Next: tr=Reverse transcriptase; Picea glauca (White spruce) (Pinus glauca). 0.0
Blast2go: hypothetical protein VITISV_032634 [Vitis vinifera] 7.78368e-24
Internal
uagpf_v2_unigene54008 uagpf v2.0 494
AutoFact: WRKY transcription factor PmWRKY108 (Fragment) n=2 Tax=Pinus monticola RepID=E6Y3E0_PINMO 0.0
Blast2go: wrky transcription factor 0.0
Coding
uagpf_v2_unigene55957 uagpf v2.0 297
AutoFact: Reverse transcriptase (Fragment) n=1 Tax=Pinus thunbergii RepID=Q9ZRK1_PINTH 1.0e-17
FL-Next: tr=Reverse transcriptase; Picea glauca (White spruce) (Pinus glauca). 0.0
Blast2go: reverse transcriptase 1.56986e-23
Internal
uagpf_v2_unigene55968 uagpf v2.0 328
AutoFact: Retrotransposon protein, putative, unclassified n=1 Tax=Oryza sativa Japonica Group RepID=Q2QXM6_ORYSJ 1.0e-29
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: gag-pol polyprotein 9.89962e-32
Internal
uagpf_v2_unigene56000 uagpf v2.0 347
AutoFact: Reverse transcriptase (Fragment) n=1 Tax=Ginkgo biloba RepID=Q4JQ43_GINBI 1.0e-18
FL-Next: tr=Reverse transcriptase; Picea glauca (White spruce) (Pinus glauca). 0.0
Blast2go: reverse transcriptase 1.01554e-23
Internal

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain