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Assembly Name: uagpf v2.0

Name: G-patch domain

Term: IPR000467  Help

Source: InterPro from Sma3


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
uagpf_v2_unigene14494 uagpf v2.0 522
AutoFact: Splicing factor 4-like protein [Arabidopsis thaliana] sp|Q94C11.1|SUGP1_ARATH RecName: Full=SURP and G-patch domain-containing protein 1-like protein; AltName: Full=Splicing factor 4-like protein; Short=SF4-like protein gb|AAK59860.1| AT3g52120/F4F15_230 6.0e-35
Blast2go: splicing factor 4-like protein 3.78351e-44
unknown
uagpf_v2_unigene14592 uagpf v2.0 598
AutoFact: Splicing factor 4-like protein [Arabidopsis thaliana] sp|Q94C11.1|SUGP1_ARATH RecName: Full=SURP and G-patch domain-containing protein 1-like protein; AltName: Full=Splicing factor 4-like protein; Short=SF4-like protein gb|AAK59860.1| AT3g52120/F4F15_230 0.0
FL-Next: sp=SURP and G-patch domain-containing protein 1-like protein; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: swap domain-containing protein 0.0
C-terminus
uagpf_v2_unigene14705 uagpf v2.0 619
AutoFact: DNA-damage-repair/toleration protein DRT111 [Arabidopsis thaliana] sp|P42698.2|DR111_ARATH RecName: Full=DNA-damage-repair/toleration protein DRT111, chloroplastic; Flags: Precursor gb|AAF19751.1|AC009917_10 Strong similarity to gi|1169200 DNA-Damage-Repa 0.0
FL-Next: sp=DNA-damage-repair/toleration protein DRT111, chloroplastic; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: dna-damage-repair toleration protein drt111 0.0
C-terminus
uagpf_v2_unigene15581 uagpf v2.0 600
AutoFact: Pin2-interacting protein x1, putative n=1 Tax=Ricinus communis RepID=B9T7Y1_RICCO 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: d111 g-patch domain-containing protein 0.0
Putative Complete
uagpf_v2_unigene16835 uagpf v2.0 401
AutoFact: Unassigned protein
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Blast2go: unnamed protein product [Vitis vinifera] 1.98271e-15
N-terminus
uagpf_v2_unigene25449 uagpf v2.0 520
AutoFact: RNA-binding protein, putative n=1 Tax=Ricinus communis RepID=B9T403_RICCO 0.0
FL-Next: tr=Predicted protein; Physcomitrella patens subsp. patens (Moss). 0.0
Blast2go: rna-binding protein 5 10 0.0
C-terminus
uagpf_v2_unigene26641 uagpf v2.0 601
AutoFact: Integrase, catalytic region; Ribonuclease H n=1 Tax=Medicago truncatula RepID=Q2HW89_MEDTR 1.0e-32
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: catalytic region ribonuclease h 9.62819e-37
Putative Complete
uagpf_v2_unigene26900 uagpf v2.0 486
AutoFact: Nucleic acid binding protein, putative n=1 Tax=Ricinus communis RepID=B9RGI9_RICCO 8.0e-14
Blast2go: d111 g-patch domain-containing protein 0.0
unknown
uagpf_v2_unigene27327 uagpf v2.0 373
AutoFact: Integrase, catalytic region; Ribonuclease H n=1 Tax=Medicago truncatula RepID=Q2HW89_MEDTR 7.0e-30
FL-Next: tr=Putative uncharacterized protein; Oryza sativa subsp. indica (Rice). 0.0
Blast2go: catalytic region ribonuclease h 1.40689e-35
C-terminus
uagpf_v2_unigene30025 uagpf v2.0 403
AutoFact: RNA-binding protein, putative n=1 Tax=Ricinus communis RepID=B9T403_RICCO 0.0
FL-Next: tr=Putative uncharacterized protein Sb03g033240; Sorghum bicolor (Sorghum) (Sorghum vulgare). 0.0
Blast2go: rna-binding protein 5 10 0.0
Internal
uagpf_v2_unigene32148 uagpf v2.0 741
AutoFact: Unassigned protein
FL-Next: tr=Putative uncharacterized protein; Glycine max (Soybean) (Glycine hispida). 0.0
Blast2go: uncharacterized protein 0.0
C-terminus
uagpf_v2_unigene35463 uagpf v2.0 344
AutoFact: dynamin-related protein 3A [Arabidopsis thaliana] sp|Q8S944.2|DRP3A_ARATH RecName: Full=Dynamin-related protein 3A; AltName: Full=Dynamin-like protein 2; AltName: Full=Dynamin-like protein 2a emb|CAA20578.1| Arabidopsis dynamin-like protein ADL2 [Arabidop 0.0
FL-Next: Isoform 2 of Dynamin-related protein 3B OS=Arabidopsis thaliana GN=DRP3B 0.0
Blast2go: dynamin-related protein 3a-like 0.0
N-terminus
uagpf_v2_unigene38712 uagpf v2.0 505
AutoFact: dynamin-related protein 3A [Arabidopsis thaliana] sp|Q8S944.2|DRP3A_ARATH RecName: Full=Dynamin-related protein 3A; AltName: Full=Dynamin-like protein 2; AltName: Full=Dynamin-like protein 2a emb|CAA20578.1| Arabidopsis dynamin-like protein ADL2 [Arabidop 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: dynamin-related protein 3a-like 0.0
Internal
uagpf_v2_unigene43431 uagpf v2.0 366
AutoFact: RNA-binding protein, putative n=1 Tax=Ricinus communis RepID=B9T403_RICCO 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: rna-binding protein 5 10 0.0
Putative N-terminus
uagpf_v2_unigene43872 uagpf v2.0 262
AutoFact: Retrotransposon gag protein n=1 Tax=Asparagus officinalis RepID=Q2AA50_ASPOF 7.0e-26
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: af378049_1reverse transcriptase 1.08763e-30
Putative Complete
uagpf_v2_unigene44839 uagpf v2.0 359
AutoFact: RVT_1 domain containing protein 8.0e-09
Blast2go: uncharacterized protein loc100259900 0.0
Coding
uagpf_v2_unigene45182 uagpf v2.0 397
AutoFact: Gag/pol polyprotein n=3 Tax=Pisum sativum RepID=Q6WAY3_PEA 1.0e-31
FL-Next: sp=RNA-directed DNA polymerase homolog; berteroana). Mitochondrion. 0.0
Blast2go: reverse transcriptase 2.99034e-37
Putative N-terminus
uagpf_v2_unigene46033 uagpf v2.0 341
AutoFact: similar to dynamin-like protein encoded by GenBank Accession Number X99669 [Arabidopsis thaliana] 3.0e-07
FL-Next: Isoform 2 of Dynamin-related protein 3A OS=Arabidopsis thaliana GN=DRP3A 0.0
Blast2go: dynamin like protein 2a 1.18771e-09
N-terminus
uagpf_v2_unigene47897 uagpf v2.0 271
AutoFact: RVT_1 domain containing protein 3.0e-10
FL-Next: sp=RNA-directed DNA polymerase homolog; berteroana). Mitochondrion. 0.0
Blast2go: reverse transcriptase 8.96781e-34
Putative N-terminus
uagpf_v2_unigene51725 uagpf v2.0 251
AutoFact: Splicing factor 4-like protein [Arabidopsis thaliana] sp|Q94C11.1|SUGP1_ARATH RecName: Full=SURP and G-patch domain-containing protein 1-like protein; AltName: Full=Splicing factor 4-like protein; Short=SF4-like protein gb|AAK59860.1| AT3g52120/F4F15_230 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: swap domain-containing protein 0.0
Internal

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain