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Assembly Name: uagpf v2.0

Name: Zinc finger, CCCH-type

Term: IPR000571  Help

Source: InterPro from Sma3


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
uagpf_v2_unigene31006 uagpf v2.0 364
AutoFact: zinc finger CCCH domain-containing protein 64 [Arabidopsis thaliana] gb|AED96820.1| zinc finger CCCH domain-containing protein 64 [Arabidopsis thaliana] 0.0
FL-Next: sp=Zinc finger CCCH domain-containing protein 64; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: zinc finger ccch domain-containing protein 64 0.0
Putative C-terminus
uagpf_v2_unigene31010 uagpf v2.0 337
AutoFact: Ank_2 domain containing protein 2.0e-10
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: zinc finger ccch domain-containing protein 0.0
Internal
uagpf_v2_unigene31406 uagpf v2.0 889
AutoFact: Phosphofructokinase, putative n=1 Tax=Ricinus communis RepID=B9RRX6_RICCO 0.0
Blast2go: 6-phosphofructokinase 3-like 0.0
unknown
uagpf_v2_unigene31550 uagpf v2.0 629
AutoFact: zinc finger CCCH domain-containing protein 18 [Arabidopsis thaliana] sp|Q9SJ41.1|C3H18_ARATH RecName: Full=Zinc finger CCCH domain-containing protein 18; Short=AtC3H18 gb|AAD29054.1| hypothetical protein [Arabidopsis thaliana] gb|AEC05899.1| zinc finger C 0.0
FL-Next: sp=Zinc finger CCCH domain-containing protein 23; Oryza sativa subsp. japonica (Rice). 0.0
Blast2go: zinc finger ccch domain-containing protein 18-like 0.0
Internal
uagpf_v2_unigene33295 uagpf v2.0 207
AutoFact: 6-phosphofructokinase 2 [Arabidopsis thaliana] sp|Q9FIK0.1|K6PF2_ARATH RecName: Full=6-phosphofructokinase 2; AltName: Full=Phosphofructokinase 2; AltName: Full=Phosphohexokinase 2 dbj|BAB11328.1| pyrophosphate-fructose-6-phosphate 1-phosphotransferase-li 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: protein 0.0
Internal
uagpf_v2_unigene33741 uagpf v2.0 255
AutoFact: zinc finger CCCH domain-containing protein 63 [Arabidopsis thaliana] dbj|BAB11046.1| unnamed protein product [Arabidopsis thaliana] gb|AED96154.1| zinc finger CCCH domain-containing protein 63 [Arabidopsis thaliana] 0.0
FL-Next: sp=Zinc finger CCCH domain-containing protein 63; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: zinc finger ccch domain-containing protein 48 0.0
C-terminus
uagpf_v2_unigene34011 uagpf v2.0 372
AutoFact: [RTKL] COG0515 Serine/threonine protein kinase 2.0e-07
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: atp binding 4.05112e-27
C-terminus
uagpf_v2_unigene34827 uagpf v2.0 341
AutoFact: Zinc finger, CCCH-type; Sugar transporter superfamily [Medicago truncatula] 7.0e-07
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: nucleic acid binding 7.88984e-14
Internal
uagpf_v2_unigene35430 uagpf v2.0 157
AutoFact: Ank_2 domain containing protein 2.0e-10
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: zinc finger ccch domain-containing protein 0.0
Internal
uagpf_v2_unigene35630 uagpf v2.0 216
AutoFact: Zinc finger CCCH domain-containing protein 17 n=4 Tax=Oryza sativa RepID=C3H17_ORYSJ 0.0
Blast2go: zinc finger ccch domain-containing protein 48 0.0
unknown
uagpf_v2_unigene36472 uagpf v2.0 334
AutoFact: Herpes_gp2 domain containing protein 7.0e-05
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: zinc finger c-x8-c-x5-c-x3-h type family protein 0.0
Complete
uagpf_v2_unigene36614 uagpf v2.0 543
AutoFact: Phosphofructokinase, putative n=1 Tax=Ricinus communis RepID=B9RRX6_RICCO 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: 6-phosphofructokinase 3-like 0.0
Putative N-terminus
uagpf_v2_unigene37118 uagpf v2.0 396
AutoFact: Herpes_gp2 domain containing protein 7.0e-05
Blast2go: zinc finger c-x8-c-x5-c-x3-h type family protein 0.0
Coding
uagpf_v2_unigene37439 uagpf v2.0 442
AutoFact: WS02722.C21_G05 SS-IL-A-FL-14 Picea sitchensis cDNA clone WS02722_G05 5, mRNA sequence. 0.0
unknown
uagpf_v2_unigene38006 uagpf v2.0 560
AutoFact: pfam04146, YTH, YT521-B-like domain 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: yt521-b-like protein 0.0
Internal
uagpf_v2_unigene38165 uagpf v2.0 538
AutoFact: RNA binding protein, putative n=1 Tax=Ricinus communis RepID=B9SBN7_RICCO 0.0
FL-Next: sp=Pumilio homolog 12; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: protein 0.0
Internal
uagpf_v2_unigene38332 uagpf v2.0 311
AutoFact: DNA binding / nucleic acid binding / protein binding / zinc ion binding 3.0e-10
FL-Next: sp=Zinc finger CCCH domain-containing protein 19; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: protein 5.76748e-16
Internal
uagpf_v2_unigene39688 uagpf v2.0 373
AutoFact: ABC transporter D family member 2, chloroplastic n=2 Tax=Arabidopsis RepID=AB2D_ARATH 3.0e-22
FL-Next: sp=ABC transporter D family member 2, chloroplastic; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: abc transporter d family member 2 1.50853e-24
C-terminus
uagpf_v2_unigene39854 uagpf v2.0 273
AutoFact: Nucleic acid binding protein, putative n=1 Tax=Ricinus communis RepID=B9S3U9_RICCO 2.0e-38
Blast2go: nucleic acid binding 2.95289e-40
Coding
uagpf_v2_unigene39906 uagpf v2.0 226
AutoFact: U2 snrnp auxiliary factor, small subunit, putative n=1 Tax=Ricinus communis RepID=B9SRG2_RICCO 0.0
Blast2go: u2 snrnp auxiliary small 0.0
Coding

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain