Sustainpine_db
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Assembly Name: uagpf v2.0

Name: Zinc finger, CCCH-type

Term: IPR000571  Help

Source: InterPro from Sma3

UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
 Full-Length
uagpf_v2_unigene26583 uagpf v2.0 384
• AutoFact: cleavage and polyadenylation specificity factor CPSF30 [Arabidopsis thaliana] sp|A9LNK9.1|CPSF_ARATH RecName: Full=Cleavage and polyadenylation specificity factor CPSF30; AltName: Full=Zinc finger CCCH domain-containing protein 11; Short=AtC3H11 gb|ABX260 0.0
• FL-Next: Isoform 2 of Cleavage and polyadenylation specificity factor CPSF30 OS=Arabidopsis thaliana GN=CPSF30 0.0
• Blast2go: cleavage and polyadenylation specificity factor cpsf30 0.0
Internal
uagpf_v2_unigene26949 uagpf v2.0 495
• AutoFact: pfam02037, SAP, SAP domain 1.0e-08
• Blast2go: zinc finger ccch domain-containing protein 0.0
Coding
uagpf_v2_unigene26992 uagpf v2.0 220
• AutoFact: pfam04146, YTH, YT521-B-like domain 0.0
• Blast2go: yt521-b-like protein 0.0
unknown
uagpf_v2_unigene27119 uagpf v2.0 302
• AutoFact: zinc finger protein 1 [Arabidopsis thaliana] 2.0e-25
• Blast2go: protein 0.0
Putative coding
uagpf_v2_unigene27219 uagpf v2.0 422
• AutoFact: Herpes_gp2 domain containing protein 7.0e-05
• Blast2go: zinc finger c-x8-c-x5-c-x3-h type family protein 0.0
unknown
uagpf_v2_unigene27833 uagpf v2.0 497
• AutoFact: Herpes_gp2 domain containing protein 7.0e-05
• Blast2go: zinc finger c-x8-c-x5-c-x3-h type family protein 0.0
Coding
uagpf_v2_unigene28072 uagpf v2.0 582
• AutoFact: RNA binding protein, putative n=1 Tax=Ricinus communis RepID=B9T7W6_RICCO 1.0e-21
• FL-Next: sp=Zinc finger CCCH domain-containing protein 46; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Blast2go: zinc finger ccch domain-containing protein 53-like 1.18683e-23
N-terminus
uagpf_v2_unigene28118 uagpf v2.0 409
• AutoFact: RNA recognition motif (RRM)-containing protein [Arabidopsis thaliana] gb|AEE76829.1| RNA recognition motif (RRM)-containing protein [Arabidopsis thaliana] 0.0
• Blast2go: rna recognition motif -containing protein 0.0
unknown
uagpf_v2_unigene28414 uagpf v2.0 374
• AutoFact: Unassigned protein
• FL-Next: sp=Zinc finger CCCH domain-containing protein 18; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Blast2go: rna binding 0.0
Internal
uagpf_v2_unigene28563 uagpf v2.0 259
• AutoFact: RecName: Full=Zinc finger CCCH domain-containing protein 14; Short=OsC3H14 dbj|BAD15406.1| KH domain-containing protein-like [Oryza sativa Japonica Group] gb|EAY84850.1| hypothetical protein OsI_06216 [Oryza sativa Indica Group] gb|EAZ22072.1| hypothetica 2.0e-23
• Blast2go: zinc finger ccch domain-containing protein 14-like 4.03372e-34
unknown
uagpf_v2_unigene28686 uagpf v2.0 607
• AutoFact: Herpes_gp2 domain containing protein 7.0e-05
• Blast2go: zinc finger c-x8-c-x5-c-x3-h type family protein 0.0
unknown
uagpf_v2_unigene29189 uagpf v2.0 415
• AutoFact: 6-phosphofructokinase 5, chloroplastic n=2 Tax=Arabidopsis RepID=K6PF5_ARATH 0.0
• Blast2go: 6-phosphofructokinase chloroplastic-like 0.0
Putative coding
uagpf_v2_unigene29564 uagpf v2.0 756
• AutoFact: zinc finger CCCH domain-containing protein 18 [Arabidopsis thaliana] sp|Q9SJ41.1|C3H18_ARATH RecName: Full=Zinc finger CCCH domain-containing protein 18; Short=AtC3H18 gb|AAD29054.1| hypothetical protein [Arabidopsis thaliana] gb|AEC05899.1| zinc finger C 0.0
• Blast2go: zinc finger ccch domain-containing protein 18-like 0.0
unknown
uagpf_v2_unigene30038 uagpf v2.0 227
• AutoFact: putative receptor protein kinase [Oryza sativa Japonica Group] 3.0e-13
• Blast2go: cysteine-rich receptor-like protein kinase 2 8.41573e-20
unknown
uagpf_v2_unigene30178 uagpf v2.0 318
• AutoFact: RRM_1 domain containing protein 6.0e-05
• Blast2go: zinc finger ccch domain-containing protein 18-like 0.0
unknown
uagpf_v2_unigene30179 uagpf v2.0 638
• AutoFact: zinc finger CCCH domain-containing protein 31 [Arabidopsis thaliana] sp|O22243.2|C3H31_ARATH RecName: Full=Zinc finger CCCH domain-containing protein 31; Short=AtC3H31 gb|AAC63624.1| putative ATP-dependent RNA helicase A [Arabidopsis thaliana] dbj|BAH3043 2.0e-23
• FL-Next: sp=Zinc finger CCCH domain-containing protein 4; Oryza sativa subsp. japonica (Rice). 0.0
• Blast2go: zinc finger ccch domain-containing protein 31 9.62205e-33
C-terminus
uagpf_v2_unigene30340 uagpf v2.0 350
• AutoFact: RRM_1 domain containing protein 6.0e-05
• FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
• Blast2go: zinc finger ccch domain-containing protein 18-like 0.0
Internal
uagpf_v2_unigene30364 uagpf v2.0 453
• AutoFact: zinc finger CCCH domain-containing protein 20 [Arabidopsis thaliana] sp|O82199.1|C3H20_ARATH RecName: Full=Zinc finger CCCH domain-containing protein 20; Short=AtC3H20 gb|AAC62135.1| putative CCCH-type zinc finger protein [Arabidopsis thaliana] gb|AAM6084 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: ccch-type zinc finger protein 0.0
Internal
uagpf_v2_unigene30577 uagpf v2.0 362
• AutoFact: putative LRR receptor-like serine/threonine-protein kinase RKF3 [Arabidopsis thaliana] sp|P93050.1|RKF3_ARATH RecName: Full=Probable LRR receptor-like serine/threonine-protein kinase RKF3; AltName: Full=Receptor-like kinase in flowers 3; Flags: Precursor 0.0
• Blast2go: probable lrr receptor-like serine threonine-protein kinase rkf3-like 0.0
unknown
uagpf_v2_unigene30999 uagpf v2.0 421
• AutoFact: zinc finger CCCH domain-containing protein 20 [Arabidopsis thaliana] sp|O82199.1|C3H20_ARATH RecName: Full=Zinc finger CCCH domain-containing protein 20; Short=AtC3H20 gb|AAC62135.1| putative CCCH-type zinc finger protein [Arabidopsis thaliana] gb|AAM6084 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: ccch-type zinc finger protein 0.0
N-terminus

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain