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Assembly Name: uagpf v2.0

Name: Zinc finger, CCCH-type

Term: IPR000571  Help

Source: InterPro from Sma3


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
uagpf_v2_unigene13810 uagpf v2.0 915
AutoFact: SWIB/MDM2 and Plus-3 and GYF domain-containing protein [Arabidopsis thaliana] sp|Q9FT92.2|Y5843_ARATH RecName: Full=Uncharacterized protein At5g08430 gb|ACF06124.1| At5g08430 [Arabidopsis thaliana] gb|AED91300.1| SWIB/MDM2 and Plus-3 and GYF domain-contai 1.0e-31
FL-Next: sp=Zinc finger CCCH domain-containing protein 44; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: zinc finger ccch domain-containing protein 44-like 0.0
Internal
uagpf_v2_unigene14582 uagpf v2.0 1156
AutoFact: Zinc finger CCCH domain-containing protein 14 n=2 Tax=Oryza sativa RepID=C3H14_ORYSJ 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: zinc finger ccch domain-containing protein 14-like 0.0
C-terminus
uagpf_v2_unigene15630 uagpf v2.0 610
AutoFact: Unassigned protein
FL-Next: sp=Zinc finger CCCH domain-containing protein 46; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: zinc finger ccch domain-containing protein 53-like 0.0
N-terminus
uagpf_v2_unigene15896 uagpf v2.0 635
AutoFact: Zinc finger CCCH domain-containing protein 14 n=2 Tax=Oryza sativa RepID=C3H14_ORYSJ 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: zinc finger ccch domain-containing protein 14-like 0.0
Putative N-terminus
uagpf_v2_unigene16198 uagpf v2.0 1375
AutoFact: prolyl 4-hydroxylase [Dianthus caryophyllus] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: prolyl 4-hydroxylase subunit alpha-1-like 0.0
Complete
uagpf_v2_unigene16860 uagpf v2.0 374
AutoFact: zinc finger CCCH domain-containing protein 65 [Arabidopsis thaliana] sp|Q9LTS7.1|C3H65_ARATH RecName: Full=Zinc finger CCCH domain-containing protein 65; Short=AtC3H65; AltName: Full=Protein EMBRYO DEFECTIVE 1789 dbj|BAA97023.1| unnamed protein product [A 4.0e-26
Blast2go: zinc finger ccch domain-containing protein 65 3.77671e-30
Coding
uagpf_v2_unigene17463 uagpf v2.0 868
AutoFact: Prolyl 4-hydroxylase alpha subunit, putative n=1 Tax=Ricinus communis RepID=B9RSW4_RICCO 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: prolyl 4-hydroxylase alpha subunit-like protein 0.0
C-terminus
uagpf_v2_unigene17858 uagpf v2.0 721
AutoFact: zinc finger CCCH domain-containing protein 32 [Arabidopsis thaliana] ref|NP_001078078.1| zinc finger CCCH domain-containing protein 32 [Arabidopsis thaliana] sp|Q84W91.2|C3H32_ARATH RecName: Full=Zinc finger CCCH domain-containing protein 32; Short=AtC3H3 0.0
Blast2go: nucleic acid binding 0.0
unknown
uagpf_v2_unigene18032 uagpf v2.0 1227
AutoFact: Herpes_gp2 domain containing protein 7.0e-05
FL-Next: sp=Zinc finger CCCH domain-containing protein 32; Oryza sativa subsp. japonica (Rice). 0.0
Blast2go: zinc finger c-x8-c-x5-c-x3-h type family protein 0.0
Putative N-terminus
uagpf_v2_unigene18566 uagpf v2.0 863
AutoFact: Zinc finger, CCCH-type; Sugar transporter superfamily [Medicago truncatula] 0.0
Blast2go: nucleic acid binding 0.0
unknown
uagpf_v2_unigene18889 uagpf v2.0 1099
AutoFact: zinc finger CCCH domain-containing protein 18 [Arabidopsis thaliana] sp|Q9SJ41.1|C3H18_ARATH RecName: Full=Zinc finger CCCH domain-containing protein 18; Short=AtC3H18 gb|AAD29054.1| hypothetical protein [Arabidopsis thaliana] gb|AEC05899.1| zinc finger C 0.0
FL-Next: Isoform 2 of Zinc finger CCCH domain-containing protein 22 OS=Oryza sativa subsp. japonica GN=Os03g0328900 0.0
Blast2go: zinc finger ccch domain-containing protein 18-like 0.0
N-terminus
uagpf_v2_unigene18961 uagpf v2.0 462
AutoFact: Prolyl 4-hydroxylase alpha subunit, putative n=1 Tax=Ricinus communis RepID=B9RSW4_RICCO 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: prolyl 4-hydroxylase alpha subunit-like protein 0.0
N-terminus
uagpf_v2_unigene18986 uagpf v2.0 1231
AutoFact: zinc finger CCCH domain-containing protein 32 [Arabidopsis thaliana] ref|NP_001078078.1| zinc finger CCCH domain-containing protein 32 [Arabidopsis thaliana] sp|Q84W91.2|C3H32_ARATH RecName: Full=Zinc finger CCCH domain-containing protein 32; Short=AtC3H3 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: nucleic acid binding 0.0
C-terminus
uagpf_v2_unigene19150 uagpf v2.0 1539
AutoFact: RecName: Full=Zinc finger CCCH domain-containing protein 14; Short=OsC3H14 dbj|BAD15406.1| KH domain-containing protein-like [Oryza sativa Japonica Group] gb|EAY84850.1| hypothetical protein OsI_06216 [Oryza sativa Indica Group] gb|EAZ22072.1| hypothetica 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: zinc finger ccch domain-containing protein 14-like 0.0
Complete
uagpf_v2_unigene19625 uagpf v2.0 933
AutoFact: U2 snrnp auxiliary factor, small subunit, putative n=1 Tax=Ricinus communis RepID=B9SRG2_RICCO 0.0
Blast2go: u2 snrnp auxiliary small 0.0
unknown
uagpf_v2_unigene19626 uagpf v2.0 863
AutoFact: zinc finger CCCH domain-containing protein 12 [Arabidopsis thaliana] sp|Q9LQM3.1|C3H12_ARATH RecName: Full=Zinc finger CCCH domain-containing protein 12; Short=AtC3H12 gb|AAF81332.1|AC007767_12 Contains similarity to an unknown protein At2g35430 gi|360814 1.0e-35
Blast2go: zinc finger ccch domain-containing protein 56-like 0.0
Putative coding
uagpf_v2_unigene25105 uagpf v2.0 269
AutoFact: Zinc finger, CCCH-type n=1 Tax=Medicago truncatula RepID=A2Q3L5_MEDTR 0.0
Blast2go: nucleic acid binding 0.0
Putative coding
uagpf_v2_unigene25138 uagpf v2.0 743
AutoFact: Nucleic acid binding protein, putative n=1 Tax=Ricinus communis RepID=B9RT23_RICCO 9.80909e-45
Blast2go: zinc finger ccch domain-containing protein 32 0.0
unknown
uagpf_v2_unigene25716 uagpf v2.0 283
AutoFact: phototropic-responsive NPH3-like protein [Arabidopsis thaliana] ref|NP_974103.1| phototropic-responsive NPH3-like protein [Arabidopsis thaliana] ref|NP_001185347.1| phototropic-responsive NPH3-like protein [Arabidopsis thaliana] sp|Q9C9V6.1|Y1790_ARATH Re 0.0
Blast2go: phototropic-responsive nph3-like protein 0.0
unknown
uagpf_v2_unigene25752 uagpf v2.0 404
AutoFact: zinc finger CCCH domain-containing protein 20 [Arabidopsis thaliana] sp|O82199.1|C3H20_ARATH RecName: Full=Zinc finger CCCH domain-containing protein 20; Short=AtC3H20 gb|AAC62135.1| putative CCCH-type zinc finger protein [Arabidopsis thaliana] gb|AAM6084 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: ccch-type zinc finger protein 0.0
Internal

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain