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Assembly Name: uagpf v2.0

Name: Zinc finger, CCCH-type

Term: IPR000571  Help

Source: InterPro from Sma3

UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
 Full-Length
uagpf_v2_unigene8648 uagpf v2.0 448
• AutoFact: Zinc finger, CCCH-type n=1 Tax=Medicago truncatula RepID=A2Q3L5_MEDTR 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: zinc finger ccch domain-containing protein 30-like 0.0
Internal
uagpf_v2_unigene8862 uagpf v2.0 370
• AutoFact: Herpes_gp2 domain containing protein 7.0e-05
• Blast2go: zinc finger c-x8-c-x5-c-x3-h type family protein 0.0
Putative coding
uagpf_v2_unigene8966 uagpf v2.0 416
• AutoFact: Unassigned protein
• Blast2go: unknown [Picea sitchensis] 0.0
unknown
uagpf_v2_unigene9072 uagpf v2.0 554
• AutoFact: Ank_2 domain containing protein 2.0e-10
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: zinc finger ccch domain-containing protein 0.0
Internal
uagpf_v2_unigene9242 uagpf v2.0 612
• AutoFact: Nucleic acid binding protein, putative n=1 Tax=Ricinus communis RepID=B9S3U9_RICCO 2.0e-38
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: nucleic acid binding 2.95289e-40
Putative C-terminus
uagpf_v2_unigene9334 uagpf v2.0 708
• AutoFact: zinc finger CCCH domain-containing protein 18 [Arabidopsis thaliana] sp|Q9SJ41.1|C3H18_ARATH RecName: Full=Zinc finger CCCH domain-containing protein 18; Short=AtC3H18 gb|AAD29054.1| hypothetical protein [Arabidopsis thaliana] gb|AEC05899.1| zinc finger C 0.0
• FL-Next: sp=Zinc finger CCCH domain-containing protein 18; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Blast2go: zinc finger ccch domain-containing protein 18-like 0.0
Internal
uagpf_v2_unigene9902 uagpf v2.0 508
• AutoFact: Zinc finger, CCCH-type n=1 Tax=Medicago truncatula RepID=A2Q3L5_MEDTR 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: nucleic acid binding 0.0
Internal
uagpf_v2_unigene10298 uagpf v2.0 384
• AutoFact: zinc finger CCCH domain-containing protein 12 [Arabidopsis thaliana] sp|Q9LQM3.1|C3H12_ARATH RecName: Full=Zinc finger CCCH domain-containing protein 12; Short=AtC3H12 gb|AAF81332.1|AC007767_12 Contains similarity to an unknown protein At2g35430 gi|360814 1.0e-35
• FL-Next: sp=Zinc finger CCCH domain-containing protein 56; Oryza sativa subsp. japonica (Rice). 0.0
• Blast2go: zinc finger ccch domain-containing protein 56-like 0.0
Internal
uagpf_v2_unigene10320 uagpf v2.0 746
• AutoFact: zinc finger CCCH domain-containing protein 24 [Arabidopsis thaliana] sp|Q8L7S3.1|C3H24_ARATH RecName: Full=Zinc finger CCCH domain-containing protein 24; Short=AtC3H24 gb|AAM91097.1| At2g28450/T1B3.3 [Arabidopsis thaliana] gb|AAN72304.1| At2g28450/T1B3.3 0.0
• FL-Next: sp=Zinc finger CCCH domain-containing protein 24; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Blast2go: zinc finger ccch domain-containing protein 24-like 0.0
Internal
uagpf_v2_unigene10696 uagpf v2.0 659
• AutoFact: RNA binding protein, putative n=1 Tax=Ricinus communis RepID=B9T7W6_RICCO 1.0e-21
• FL-Next: sp=Zinc finger CCCH domain-containing protein 46; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Blast2go: zinc finger ccch domain-containing protein 53-like 1.09144e-23
N-terminus
uagpf_v2_unigene10958 uagpf v2.0 532
• AutoFact: zinc finger CCCH domain-containing protein 18 [Arabidopsis thaliana] sp|Q9SJ41.1|C3H18_ARATH RecName: Full=Zinc finger CCCH domain-containing protein 18; Short=AtC3H18 gb|AAD29054.1| hypothetical protein [Arabidopsis thaliana] gb|AEC05899.1| zinc finger C 0.0
• Blast2go: zinc finger ccch domain-containing protein 18-like 0.0
Putative coding
uagpf_v2_unigene11471 uagpf v2.0 513
• AutoFact: RNA recognition motif (RRM)-containing protein [Arabidopsis thaliana] gb|AEE76829.1| RNA recognition motif (RRM)-containing protein [Arabidopsis thaliana] 0.0
• FL-Next: tr=Predicted protein; subsp. trichocarpa). 0.0
• Blast2go: rna recognition motif -containing protein 0.0
Internal
uagpf_v2_unigene11816 uagpf v2.0 594
• AutoFact: zinc finger CCCH domain-containing protein 32 [Arabidopsis thaliana] ref|NP_001078078.1| zinc finger CCCH domain-containing protein 32 [Arabidopsis thaliana] sp|Q84W91.2|C3H32_ARATH RecName: Full=Zinc finger CCCH domain-containing protein 32; Short=AtC3H3 0.0
• Blast2go: nucleic acid binding 0.0
Putative coding
uagpf_v2_unigene11860 uagpf v2.0 782
• AutoFact: Prolyl 4-hydroxylase alpha subunit, putative n=1 Tax=Ricinus communis RepID=B9RSW4_RICCO 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: prolyl 4-hydroxylase alpha subunit-like protein 0.0
N-terminus
uagpf_v2_unigene12834 uagpf v2.0 2043
• AutoFact: Zinc finger CCCH domain-containing protein 35 n=2 Tax=Oryza sativa RepID=C3H35_ORYSJ 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: protein 0.0
C-terminus
uagpf_v2_unigene13216 uagpf v2.0 803
• AutoFact: zinc finger CCCH domain-containing protein 24 [Arabidopsis thaliana] sp|Q8L7S3.1|C3H24_ARATH RecName: Full=Zinc finger CCCH domain-containing protein 24; Short=AtC3H24 gb|AAM91097.1| At2g28450/T1B3.3 [Arabidopsis thaliana] gb|AAN72304.1| At2g28450/T1B3.3 0.0
• FL-Next: sp=Zinc finger CCCH domain-containing protein 24; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Blast2go: zinc finger ccch domain-containing protein 24-like 0.0
C-terminus
uagpf_v2_unigene13277 uagpf v2.0 898
• AutoFact: U2 snrnp auxiliary factor, small subunit, putative n=2 Tax=rosids RepID=B9R8U8_RICCO 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: splicing factor u2af 38 kda subunit 0.0
C-terminus
uagpf_v2_unigene13552 uagpf v2.0 481
• AutoFact: DNA mismatch repair protein PMS2 [Arabidopsis thaliana] gb|AAL01156.1| DNA mismatch repair protein [Arabidopsis thaliana] gb|AEE82175.1| DNA mismatch repair protein PMS2 [Arabidopsis thaliana] 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: dna mismatch repair protein 0.0
C-terminus
uagpf_v2_unigene13610 uagpf v2.0 987
• AutoFact: Eukaryotic initiation factor iso4G n=1 Tax=Carica papaya RepID=E3V0I0_CARPA 0.0
• FL-Next: sp=Eukaryotic initiation factor iso-4F subunit p82-34; Triticum aestivum (Wheat). 0.0
• Blast2go: eukaryotic translation initiation factor 4 gamma 0.0
N-terminus
uagpf_v2_unigene13788 uagpf v2.0 830
• AutoFact: SRI domain containing protein 2.0e-05
• Blast2go: zinc finger ccch domain-containing protein 0.0
Coding

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain