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Assembly Name: uagpf v2.0

Name: Zinc finger, CCCH-type

Term: IPR000571  Help

Source: InterPro from Sma3


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
uagpf_v2_unigene5848 uagpf v2.0 550
AutoFact: WS0381.C21_G06 SS-B-23 Picea sitchensis cDNA clone WS0381_G06 3', mRNA sequence. 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: zinc finger ccch domain-containing protein 13-like 1.20262e-35
N-terminus
uagpf_v2_unigene5899 uagpf v2.0 1548
AutoFact: floral homeotic protein HUA1 [Arabidopsis thaliana] 0.0
FL-Next: sp=Phospholipase D; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: zinc finger ccch domain-containing protein 37 0.0
Internal
uagpf_v2_unigene5927 uagpf v2.0 378
AutoFact: RNA recognition motif (RRM)-containing protein [Arabidopsis thaliana] gb|AEE76829.1| RNA recognition motif (RRM)-containing protein [Arabidopsis thaliana] 1.0e-17
FL-Next: tr=Predicted protein; Physcomitrella patens subsp. patens (Moss). 0.0
Blast2go: rna recognition motif -containing protein 1.59963e-28
Internal
uagpf_v2_unigene6515 uagpf v2.0 824
AutoFact: RecName: Full=Zinc finger CCCH domain-containing protein 14; Short=OsC3H14 dbj|BAD15406.1| KH domain-containing protein-like [Oryza sativa Japonica Group] gb|EAY84850.1| hypothetical protein OsI_06216 [Oryza sativa Indica Group] gb|EAZ22072.1| hypothetica 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: zinc finger ccch domain-containing protein 14-like 0.0
N-terminus
uagpf_v2_unigene6665 uagpf v2.0 1625
AutoFact: Unassigned protein
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: protein 0.0
N-terminus
uagpf_v2_unigene6707 uagpf v2.0 1879
AutoFact: RecName: Full=Zinc finger CCCH domain-containing protein 14; Short=OsC3H14 dbj|BAD15406.1| KH domain-containing protein-like [Oryza sativa Japonica Group] gb|EAY84850.1| hypothetical protein OsI_06216 [Oryza sativa Indica Group] gb|EAZ22072.1| hypothetica 2.0e-23
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: zinc finger ccch domain-containing protein 14-like 4.03372e-34
Putative Complete
uagpf_v2_unigene6764 uagpf v2.0 909
AutoFact: Zinc finger CCCH domain-containing protein 35 n=2 Tax=Oryza sativa RepID=C3H35_ORYSJ 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: protein 0.0
N-terminus
uagpf_v2_unigene6891 uagpf v2.0 851
AutoFact: E3 ubiquitin-protein ligase makorin [Arabidopsis thaliana] ref|NP_974255.1| E3 ubiquitin-protein ligase makorin [Arabidopsis thaliana] sp|Q6IDS6.1|C3H35_ARATH RecName: Full=E3 ubiquitin-protein ligase makorin; AltName: Full=Zinc finger CCCH domain-contain 4.0e-23
FL-Next: sp=E3 ubiquitin-protein ligase makorin; Oryza sativa subsp. japonica (Rice). 0.0
Blast2go: e3 ubiquitin-protein ligase makorin 9.26154e-36
C-terminus
uagpf_v2_unigene6989 uagpf v2.0 539
AutoFact: SRI domain containing protein 2.0e-05
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: zinc finger ccch domain-containing protein 0.0
C-terminus
uagpf_v2_unigene7215 uagpf v2.0 808
AutoFact: Phosphofructokinase, putative n=1 Tax=Ricinus communis RepID=B9RRX6_RICCO 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: 6-phosphofructokinase 3-like 0.0
Internal
uagpf_v2_unigene7308 uagpf v2.0 388
AutoFact: Unassigned protein
Blast2go: rna binding 0.0
Coding
uagpf_v2_unigene7519 uagpf v2.0 453
AutoFact: SWIB/MDM2 and Plus-3 and GYF domain-containing protein [Arabidopsis thaliana] sp|Q9FT92.2|Y5843_ARATH RecName: Full=Uncharacterized protein At5g08430 gb|ACF06124.1| At5g08430 [Arabidopsis thaliana] gb|AED91300.1| SWIB/MDM2 and Plus-3 and GYF domain-contai 1.0e-31
FL-Next: sp=Zinc finger CCCH domain-containing protein 44; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: zinc finger ccch domain-containing protein 44-like 0.0
Internal
uagpf_v2_unigene7528 uagpf v2.0 709
AutoFact: zinc finger CCCH domain-containing protein 18 [Arabidopsis thaliana] sp|Q9SJ41.1|C3H18_ARATH RecName: Full=Zinc finger CCCH domain-containing protein 18; Short=AtC3H18 gb|AAD29054.1| hypothetical protein [Arabidopsis thaliana] gb|AEC05899.1| zinc finger C 0.0
Blast2go: zinc finger ccch domain-containing protein 18-like 0.0
unknown
uagpf_v2_unigene7652 uagpf v2.0 1075
AutoFact: zinc finger CCCH domain-containing protein 51 [Arabidopsis thaliana] ref|NP_850780.1| zinc finger CCCH domain-containing protein 51 [Arabidopsis thaliana] sp|Q9FNG6.1|C3H51_ARATH RecName: Full=Zinc finger CCCH domain-containing protein 51; Short=AtC3H51 d 0.0
FL-Next: sp=Zinc finger CCCH domain-containing protein 15; Oryza sativa subsp. japonica (Rice). 0.0
Blast2go: zinc finger ccch domain-containing protein 51 0.0
C-terminus
uagpf_v2_unigene7988 uagpf v2.0 407
AutoFact: Makorin-1, putative n=1 Tax=Ricinus communis RepID=B9SL96_RICCO 0.0
FL-Next: sp=E3 ubiquitin-protein ligase makorin; Oryza sativa subsp. japonica (Rice). 0.0
Blast2go: ccch-type zinc finger protein c3h69 0.0
N-terminus
uagpf_v2_unigene8122 uagpf v2.0 813
AutoFact: Nucleic acid binding protein, putative n=1 Tax=Ricinus communis RepID=B9S3U9_RICCO 2.0e-38
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: nucleic acid binding 2.95289e-40
Internal
uagpf_v2_unigene8141 uagpf v2.0 259
AutoFact: Rrm/rnp domain, putative n=1 Tax=Ricinus communis RepID=B9SF86_RICCO 2.0e-18
Blast2go: zinc finger ccch domain-containing protein 41 6.73948e-20
unknown
uagpf_v2_unigene8155 uagpf v2.0 299
AutoFact: Unassigned protein
Blast2go: zinc finger ccch domain-containing protein 53-like 0.0
Putative coding
uagpf_v2_unigene8280 uagpf v2.0 836
AutoFact: zinc finger CCCH domain-containing protein 32 [Arabidopsis thaliana] ref|NP_001078078.1| zinc finger CCCH domain-containing protein 32 [Arabidopsis thaliana] sp|Q84W91.2|C3H32_ARATH RecName: Full=Zinc finger CCCH domain-containing protein 32; Short=AtC3H3 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: nucleic acid binding 0.0
Putative N-terminus
uagpf_v2_unigene8634 uagpf v2.0 520
AutoFact: Phototropic-responsive NPH3 protein [Arabidopsis thaliana] sp|Q9FKB6.1|Y5880_ARATH RecName: Full=BTB/POZ domain-containing protein At5g48800 dbj|BAB09433.1| non-phototropic hypocotyl-like protein [Arabidopsis thaliana] gb|AED95726.1| Phototropic-responsiv 0.0
Blast2go: phototropic-responsive nph3 family protein 0.0
unknown

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain