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Assembly Name: uagpf v2.0

Name: RNA recognition motif domain

Term: IPR000504  Help

Source: InterPro from Sma3


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
uagpf_v2_unigene7644 uagpf v2.0 545
AutoFact: Putative RRM-containing protein SEB-4 n=3 Tax=Poaceae RepID=Q5N8W4_ORYSJ 0.0
Blast2go: rna-binding protein 0.0
unknown
uagpf_v2_unigene7729 uagpf v2.0 1112
AutoFact: putative arginine/serine-rich splicing factor [Medicago sativa subsp. x varia] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: splicing arginine serine-rich 0.0
C-terminus
uagpf_v2_unigene7746 uagpf v2.0 416
AutoFact: RNA-binding protein [Arabidopsis thaliana] gb|AAK52994.1|AF375410_1 At2g43970/F6E13.10 [Arabidopsis thaliana] gb|AAK56266.1|AF367277_1 At2g43970/F6E13.10 [Arabidopsis thaliana] gb|AAK06847.1| VirF-interacting protein FIP1 [Arabidopsis thaliana] gb|AAL0708 0.0
Blast2go: lupus la 0.0
Putative coding
uagpf_v2_unigene7870 uagpf v2.0 504
AutoFact: putative RNA binding protein [Arabidopsis thaliana] 1.0e-07
Blast2go: glycine-rich rna-binding protein 7 6.73043e-14
unknown
uagpf_v2_unigene7880 uagpf v2.0 1249
AutoFact: sarcoplasmic reticulum protein-like protein [Oryza sativa Japonica Group] gb|AAS07364.1| sarcoplasmic reticulum protein (with alternative splicing) [Oryza sativa Japonica Group] gb|ABF99835.1| RNA-binding protein Luc7-like 2, putative, expressed [Oryza sa 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: rna-binding protein luc7-like expressed 0.0
Putative C-terminus
uagpf_v2_unigene7977 uagpf v2.0 416
AutoFact: poly(A)-binding protein [Cucumis sativus] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: poly -binding protein 0.0
Putative N-terminus
uagpf_v2_unigene8141 uagpf v2.0 259
AutoFact: Rrm/rnp domain, putative n=1 Tax=Ricinus communis RepID=B9SF86_RICCO 2.0e-18
Blast2go: zinc finger ccch domain-containing protein 41 6.73948e-20
unknown
uagpf_v2_unigene8155 uagpf v2.0 299
AutoFact: Unassigned protein
Blast2go: zinc finger ccch domain-containing protein 53-like 0.0
Putative coding
uagpf_v2_unigene8460 uagpf v2.0 368
AutoFact: Predicted protein n=2 Tax=Physcomitrella patens RepID=A9S3P5_PHYPA 6.0e-11
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: protein 0.0
N-terminus
uagpf_v2_unigene8465 uagpf v2.0 488
AutoFact: RNA binding protein, putative n=1 Tax=Ricinus communis RepID=B9S3Y1_RICCO 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: rna binding 0.0
Internal
uagpf_v2_unigene8512 uagpf v2.0 152
AutoFact: Gly_rich multi-domain protein 5.0e-15
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: heterogeneous nuclear ribonucleoprotein 0.0
Internal
uagpf_v2_unigene8517 uagpf v2.0 711
AutoFact: splicing factor 1 [Arabidopsis thaliana] ref|NP_851169.1| splicing factor 1 [Arabidopsis thaliana] ref|NP_001032055.1| splicing factor 1 [Arabidopsis thaliana] dbj|BAA97393.1| unnamed protein product [Arabidopsis thaliana] gb|AAN13087.1| unknown protein [ 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: splicing factor 1 0.0
Internal
uagpf_v2_unigene8557 uagpf v2.0 1145
AutoFact: RNA-binding protein MEI2, putative; 36123-32976 [Arabidopsis thaliana] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: protein mei2-like 2-like 0.0
Internal
uagpf_v2_unigene8558 uagpf v2.0 247
AutoFact: CCR4-NOT transcription complex subunit 4 [Arabidopsis thaliana] emb|CAB75492.1| putative protein [Arabidopsis thaliana] gb|AEE78053.1| CCR4-NOT transcription complex subunit 4 [Arabidopsis thaliana] 6.0e-29
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Blast2go: ccr4-not transcription complex subunit 1.16942e-32
Internal
uagpf_v2_unigene8588 uagpf v2.0 285
AutoFact: pollen-specific kinase partner protein [Solanum lycopersicum] 0.0
FL-Next: sp=Rho guanine nucleotide exchange factor 8; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: protein 0.0
Internal
uagpf_v2_unigene8807 uagpf v2.0 430
AutoFact: TPX2 (targeting protein for Xklp2) family protein [Arabidopsis thaliana] gb|AAU44468.1| hypothetical protein AT3G01015 [Arabidopsis thaliana] gb|AAY78731.1| hypothetical protein At3g01015 [Arabidopsis thaliana] gb|AEE73594.1| TPX2 (targeting protein for X 0.0
Blast2go: tpx2 (targeting protein for xklp2) family protein 0.0
Putative coding
uagpf_v2_unigene8849 uagpf v2.0 807
AutoFact: Whole genome shotgun sequence of line PN40024, scaffold_23.assembly12x (Fragment) n=3 Tax=Vitis vinifera RepID=D7SP17_VITVI 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: rna binding 0.0
N-terminus
uagpf_v2_unigene8887 uagpf v2.0 431
AutoFact: Unassigned protein
FL-Next: tr=Putative uncharacterized protein Sb03g027370; Sorghum bicolor (Sorghum) (Sorghum vulgare). 0.0
Blast2go: amino acid permease 1.3175e-41
C-terminus
uagpf_v2_unigene8908 uagpf v2.0 404
AutoFact: cell division protease ftsH-11 [Arabidopsis thaliana] sp|Q9FGM0.1|FTSHB_ARATH RecName: Full=ATP-dependent zinc metalloprotease FTSH 11, chloroplastic/mitochondrial; Short=AtFTSH11; Flags: Precursor dbj|BAB08420.1| cell division protein FtsH protease-like 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: atp-dependent zinc metalloprotease ftsh chloroplastic mitochondrial-like 0.0
Internal
uagpf_v2_unigene9082 uagpf v2.0 569
AutoFact: endonuclease III [Arabidopsis thaliana] gb|AAD26474.2| putative endonuclease [Arabidopsis thaliana] gb|AEC08549.1| endonuclease III [Arabidopsis thaliana] 3.0e-34
Blast2go: endonuclease iii 1.4013e-44
unknown

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain