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Assembly Name: uagpf v2.0

Name: RNA recognition motif domain

Term: IPR000504  Help

Source: InterPro from Sma3


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
uagpf_v2_unigene6779 uagpf v2.0 750
AutoFact: Ribonucleic acid binding protein S1, putative n=1 Tax=Ricinus communis RepID=B9RI44_RICCO 2.00386e-43
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: ribonucleic acid binding protein 0.0
N-terminus
uagpf_v2_unigene6848 uagpf v2.0 687
AutoFact: Glycine-rich RNA-binding protein n=4 Tax=Pinaceae RepID=Q9XEL4_PICGL 4.0e-37
Blast2go: glycine-rich rna binding protein 0.0
unknown
uagpf_v2_unigene6907 uagpf v2.0 638
AutoFact: Os01g0367300 protein n=1 Tax=Oryza sativa Japonica Group RepID=Q5JJM4_ORYSJ 8.0e-37
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: rna recognition motif-containing protein 0.0
C-terminus
uagpf_v2_unigene6913 uagpf v2.0 735
AutoFact: homeodomain-leucine zipper protein 56 [Glycine max] 8.00001e-41
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: homeobox-leucine zipper protein athb-6-like 0.0
Putative N-terminus
uagpf_v2_unigene6977 uagpf v2.0 436
AutoFact: putative pre-mRNA splicing factor SF2 [Oryza sativa Japonica Group] 0.0
Blast2go: arginine serine-rich splicing 0.0
unknown
uagpf_v2_unigene7010 uagpf v2.0 523
AutoFact: putative arginine/serine-rich splicing factor [Medicago sativa subsp. x varia] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: splicing arginine serine-rich 0.0
N-terminus
uagpf_v2_unigene7031 uagpf v2.0 705
AutoFact: RNA recognition motif-containing protein [Arabidopsis thaliana] ref|NP_974317.1| RNA recognition motif-containing protein [Arabidopsis thaliana] dbj|BAA97064.1| unnamed protein product [Arabidopsis thaliana] gb|AAL36202.1| putative RNA-binding protein [Ar 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: protein 0.0
C-terminus
uagpf_v2_unigene7048 uagpf v2.0 532
AutoFact: Splicing factor-like protein n=3 Tax=Vitis RepID=Q6R4Q7_VITRI 1.0e-20
Blast2go: arginine serine-rich splicing 0.0
unknown
uagpf_v2_unigene7094 uagpf v2.0 1405
AutoFact: Os07g0631900 protein n=2 Tax=Oryza sativa RepID=Q8LHN4_ORYSJ 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: rna-binding protein 0.0
Complete
uagpf_v2_unigene7185 uagpf v2.0 2330
AutoFact: nuclear transport factor 2 and RNA recognition motif domain-containing protein [Arabidopsis thaliana] dbj|BAB10647.1| unnamed protein product [Arabidopsis thaliana] gb|AAL32982.1| AT5g60980/MSL3_100 [Arabidopsis thaliana] gb|AAO23575.1| At5g60980/MSL3_100 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: rna binding 0.0
Complete
uagpf_v2_unigene7215 uagpf v2.0 808
AutoFact: Phosphofructokinase, putative n=1 Tax=Ricinus communis RepID=B9RRX6_RICCO 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: 6-phosphofructokinase 3-like 0.0
Internal
uagpf_v2_unigene7273 uagpf v2.0 551
AutoFact: ASF/SF2-like pre-mRNA splicing factor SRP32' [Zea mays] 0.0
Blast2go: arginine serine-rich splicing 0.0
Coding
uagpf_v2_unigene7283 uagpf v2.0 855
AutoFact: Lupus la ribonucleoprotein, putative n=1 Tax=Ricinus communis RepID=B9SSZ3_RICCO 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: lupus la 0.0
N-terminus
uagpf_v2_unigene7308 uagpf v2.0 388
AutoFact: Unassigned protein
Blast2go: rna binding 0.0
Coding
uagpf_v2_unigene7440 uagpf v2.0 356
AutoFact: pfam01762, Galactosyl_T, Galactosyltransferase 0.0
Blast2go: glycosyltransferase-like protein 0.0
unknown
uagpf_v2_unigene7474 uagpf v2.0 623
AutoFact: Drf_FH1 multi-domain protein 6.0e-17
Coding
uagpf_v2_unigene7528 uagpf v2.0 709
AutoFact: zinc finger CCCH domain-containing protein 18 [Arabidopsis thaliana] sp|Q9SJ41.1|C3H18_ARATH RecName: Full=Zinc finger CCCH domain-containing protein 18; Short=AtC3H18 gb|AAD29054.1| hypothetical protein [Arabidopsis thaliana] gb|AEC05899.1| zinc finger C 0.0
Blast2go: zinc finger ccch domain-containing protein 18-like 0.0
unknown
uagpf_v2_unigene7559 uagpf v2.0 344
AutoFact: [R] COG0724 RNA-binding proteins (RRM domain) 7.0e-36
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: spliceosomal protein 0.0
C-terminus
uagpf_v2_unigene7571 uagpf v2.0 644
AutoFact: Receptor-like kinase n=1 Tax=Marchantia polymorpha RepID=A7VM23_MARPO 0.0
Blast2go: protein 0.0
unknown
uagpf_v2_unigene7603 uagpf v2.0 1033
AutoFact: Unassigned protein
FL-Next: tr=Glycine-rich RNA-binding protein; Sequoia sempervirens (California redwood) (Taxodium sempervirens). 0.0
Putative Complete

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain