Sustainpine_db
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Assembly Name: uagpf v2.0

Name: RNA recognition motif domain

Term: IPR000504  Help

Source: InterPro from Sma3

UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
 Full-Length
uagpf_v2_unigene5869 uagpf v2.0 522
• AutoFact: Metal transporter Nramp1 n=9 Tax=Brassicaceae RepID=NRAM1_ARATH 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: metal ion transporter 0.0
Internal
uagpf_v2_unigene5927 uagpf v2.0 378
• AutoFact: RNA recognition motif (RRM)-containing protein [Arabidopsis thaliana] gb|AEE76829.1| RNA recognition motif (RRM)-containing protein [Arabidopsis thaliana] 1.0e-17
• FL-Next: tr=Predicted protein; Physcomitrella patens subsp. patens (Moss). 0.0
• Blast2go: rna recognition motif -containing protein 1.59963e-28
Internal
uagpf_v2_unigene5939 uagpf v2.0 719
• AutoFact: Nucleic acid binding protein, putative n=1 Tax=Ricinus communis RepID=B9S290_RICCO 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: nucleic acid binding 0.0
C-terminus
uagpf_v2_unigene6047 uagpf v2.0 1965
• AutoFact: putative RNA-binding like protein [Oryza sativa Japonica Group] 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: rna-binding protein 0.0
Complete
uagpf_v2_unigene6073 uagpf v2.0 1505
• AutoFact: RNA-binding protein MEI2, putative; 36123-32976 [Arabidopsis thaliana] 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: protein mei2-like 2-like 0.0
C-terminus
uagpf_v2_unigene6092 uagpf v2.0 1054
• AutoFact: MEI2-like protein 5 [Arabidopsis thaliana] ref|NP_849727.1| MEI2-like protein 5 [Arabidopsis thaliana] sp|Q8VWF5.1|AML5_ARATH RecName: Full=Protein MEI2-like 5; Short=AML5; AltName: Full=MEI2-like protein 5 gb|AAL32691.1| RNA-binding protein MEI2, putativ 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: protein mei2-like 2-like 0.0
C-terminus
uagpf_v2_unigene6122 uagpf v2.0 672
• AutoFact: RNA-binding protein AKIP1-like [Solanum tuberosum] 0.0
• Blast2go: rna recognition motif-containing protein 0.0
unknown
uagpf_v2_unigene6143 uagpf v2.0 670
• AutoFact: Os05g0427300 protein n=2 Tax=Oryza sativa RepID=Q0DI02_ORYSJ 4.0e-33
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: rna recognition motif-containing protein 0.0
C-terminus
uagpf_v2_unigene6170 uagpf v2.0 519
• AutoFact: RNA-binding protein [Medicago truncatula] 2.0e-31
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: protein 0.0
N-terminus
uagpf_v2_unigene6176 uagpf v2.0 1102
• AutoFact: putative heterogeneous nuclearribonucleoprotein A2 [Oryza sativa Japonica Group] dbj|BAD17631.1| putative heterogeneous nuclearribonucleoprotein A2 [Oryza sativa Japonica Group] 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: protein 0.0
Putative N-terminus
uagpf_v2_unigene6228 uagpf v2.0 443
• AutoFact: Glycine-rich RNA-binding protein n=4 Tax=Pinaceae RepID=Q9XEL4_PICGL 5.99994e-41
• FL-Next: tr=Glycine-rich RNA-binding protein; Picea glauca (White spruce) (Pinus glauca). 0.0
• Blast2go: glycine-rich rna-binding protein 0.0
N-terminus
uagpf_v2_unigene6340 uagpf v2.0 937
• AutoFact: Splicing factor-like protein n=3 Tax=Vitis RepID=Q6R4Q7_VITRI 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: arginine serine-rich-splicing factor rsp41 0.0
N-terminus
uagpf_v2_unigene6486 uagpf v2.0 896
• AutoFact: putative galactinol--sucrose galactosyltransferase 6 [Arabidopsis thaliana] gb|AAL90901.1| AT5g20250/F5O24_140 [Arabidopsis thaliana] gb|AAN18198.1| At5g20250/F5O24_140 [Arabidopsis thaliana] dbj|BAE99252.1| seed imbitition protein-like [Arabidopsis thali 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: galactinol--sucrose galactosyltransferase 6 0.0
C-terminus
uagpf_v2_unigene6499 uagpf v2.0 558
• AutoFact: RNA recognition motif and CCHC-type zinc finger domain-containing protein [Arabidopsis thaliana] gb|AAL11606.1|AF424613_1 AT3g26420/F20C19_14 [Arabidopsis thaliana] dbj|BAB02203.1| unnamed protein product [Arabidopsis thaliana] gb|AAK96804.1| Unknown prot 7.0e-35
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: rna recognition motif family expressed 0.0
N-terminus
uagpf_v2_unigene6513 uagpf v2.0 710
• AutoFact: homeodomain-leucine zipper protein 56 [Glycine max] 8.00001e-41
• Blast2go: homeobox-leucine zipper protein athb-6-like 0.0
Coding
uagpf_v2_unigene6539 uagpf v2.0 1687
• AutoFact: RNA-binding protein AKIP1-like n=1 Tax=Solanum tuberosum RepID=Q2V9B8_SOLTU 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Complete
uagpf_v2_unigene6644 uagpf v2.0 800
• AutoFact: putative heterogeneous nuclear ribonucleoprotein [Vitis vinifera] 0.0
• Blast2go: protein 0.0
Putative coding
uagpf_v2_unigene6687 uagpf v2.0 555
• AutoFact: DUF1777 multi-domain protein 1.0e-15
• Blast2go: splicing factor u2af large subunit b 0.0
unknown
uagpf_v2_unigene6709 uagpf v2.0 524
• AutoFact: poly(A)-binding protein II-like [Brassica rapa] 0.0
• FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
• Blast2go: protein 0.0
Complete
uagpf_v2_unigene6719 uagpf v2.0 630
• AutoFact: transformer-SR ribonucleoprotein [Nicotiana tabacum] 5.0e-35
• Blast2go: transformer-sr ribonucleoprotein 0.0
unknown

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain