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Assembly Name: uagpf v2.0

Name: RNA recognition motif domain

Term: IPR000504  Help

Source: InterPro from Sma3


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
uagpf_v2_unigene53735 uagpf v2.0 651
AutoFact: RNA recognition motif-containing protein [Arabidopsis thaliana] ref|NP_974317.1| RNA recognition motif-containing protein [Arabidopsis thaliana] dbj|BAA97064.1| unnamed protein product [Arabidopsis thaliana] gb|AAL36202.1| putative RNA-binding protein [Ar 7.00649e-44
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: rna recognition motif-containing protein 0.0
Internal
uagpf_v2_unigene53743 uagpf v2.0 423
AutoFact: Hydroxysteroid dehydrogenase, putative n=1 Tax=Ricinus communis RepID=B9R8T2_RICCO 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: short-chain dehydrogenase reductase family 42e member 1-like 0.0
C-terminus
uagpf_v2_unigene53750 uagpf v2.0 235
AutoFact: Heterogeneous nuclear ribonucleoprotein 27C, putative n=1 Tax=Ricinus communis RepID=B9SQV8_RICCO 0.0
Blast2go: heterogeneous nuclear ribonucleoprotein 0.0
unknown
uagpf_v2_unigene53805 uagpf v2.0 345
AutoFact: RNA recognition motif-containing protein [Arabidopsis thaliana] ref|NP_849832.1| RNA recognition motif-containing protein [Arabidopsis thaliana] gb|AAB71977.1| putative RNA-binding protein [Arabidopsis thaliana] gb|AAM65738.1| RNA binding protein, putativ 3.0e-33
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: rna recognition motif-containing protein 0.0
N-terminus
uagpf_v2_unigene53867 uagpf v2.0 283
AutoFact: RNA binding protein, putative n=1 Tax=Ricinus communis RepID=B9SKE9_RICCO 0.0
Blast2go: heterogeneous nuclear ribonucleoprotein q 0.0
unknown
uagpf_v2_unigene53909 uagpf v2.0 398
AutoFact: splicing factor-like protein [Vitis riparia] 6.0e-28
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: protein 6.19374e-43
N-terminus
uagpf_v2_unigene53935 uagpf v2.0 1566
AutoFact: Whole genome shotgun sequence of line PN40024, scaffold_21.assembly12x (Fragment) n=3 Tax=Vitis vinifera RepID=D7SM13_VITVI 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: rna binding 0.0
C-terminus
uagpf_v2_unigene54054 uagpf v2.0 539
AutoFact: Desiccation-related protein PCC13-62 precursor, putative [Medicago truncatula] 0.0
FL-Next: sp=Desiccation-related protein PCC13-62; Craterostigma plantagineum. 0.0
Blast2go: desiccation-related protein pcc13-62 0.0
N-terminus
uagpf_v2_unigene54056 uagpf v2.0 614
AutoFact: HnRNP n=1 Tax=Hypericum perforatum RepID=D9ZHD1_HYPPE 5.0e-23
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: protein 3.57885e-32
N-terminus
uagpf_v2_unigene54080 uagpf v2.0 549
AutoFact: putative RNA-binding protein [Arabidopsis thaliana] 1.0e-23
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: protein 2.61919e-40
N-terminus
uagpf_v2_unigene54135 uagpf v2.0 299
AutoFact: nuclear transport factor 2 and RNA recognition motif domain-containing protein [Arabidopsis thaliana] dbj|BAB09056.1| unnamed protein product [Arabidopsis thaliana] gb|AAL86001.1| unknown protein [Arabidopsis thaliana] gb|AAM45065.1| unknown protein [Arab 1.0e-19
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: ras gtpase-activating protein-binding protein 5.99084e-26
Putative N-terminus
uagpf_v2_unigene54203 uagpf v2.0 432
AutoFact: Unassigned protein
FL-Next: sp=Zinc finger CCCH domain-containing protein 53; Oryza sativa subsp. japonica (Rice). 0.0
Blast2go: zinc finger ccch domain-containing protein 53-like 1.93459e-17
N-terminus
uagpf_v2_unigene54249 uagpf v2.0 477
AutoFact: RNA recognition motif-containing protein [Arabidopsis thaliana] ref|NP_974317.1| RNA recognition motif-containing protein [Arabidopsis thaliana] dbj|BAA97064.1| unnamed protein product [Arabidopsis thaliana] gb|AAL36202.1| putative RNA-binding protein [Ar 0.0
Blast2go: protein 0.0
unknown
uagpf_v2_unigene54357 uagpf v2.0 360
AutoFact: RNA recognition motif-containing protein [Arabidopsis thaliana] ref|NP_974317.1| RNA recognition motif-containing protein [Arabidopsis thaliana] dbj|BAA97064.1| unnamed protein product [Arabidopsis thaliana] gb|AAL36202.1| putative RNA-binding protein [Ar 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: protein 0.0
N-terminus
uagpf_v2_unigene54361 uagpf v2.0 256
AutoFact: RNA recognition motif-containing protein [Arabidopsis thaliana] dbj|BAC42069.1| unknown protein [Arabidopsis thaliana] gb|AEE75401.1| RNA recognition motif-containing protein [Arabidopsis thaliana] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: rna recognition motif-containing protein 0.0
C-terminus
uagpf_v2_unigene54386 uagpf v2.0 519
AutoFact: Whole genome shotgun sequence of line PN40024, scaffold_21.assembly12x (Fragment) n=3 Tax=Vitis vinifera RepID=D7SM13_VITVI 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: rna binding 0.0
Internal
uagpf_v2_unigene54584 uagpf v2.0 258
AutoFact: BAH domain containing protein 3.0e-12
Blast2go: protein 5.04548e-29
unknown
uagpf_v2_unigene54656 uagpf v2.0 452
AutoFact: Citrate synthase n=1 Tax=Picea sitchensis RepID=B8LLL1_PICSI 0.0
Blast2go: citrate synthase 0.0
unknown
uagpf_v2_unigene54708 uagpf v2.0 362
AutoFact: U2 snrnp auxiliary factor, small subunit, putative n=1 Tax=Ricinus communis RepID=B9SRG2_RICCO 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: u2 snrnp auxiliary small 0.0
C-terminus
uagpf_v2_unigene54722 uagpf v2.0 499
AutoFact: RNA recognition motif-containing protein [Arabidopsis thaliana] ref|NP_974317.1| RNA recognition motif-containing protein [Arabidopsis thaliana] dbj|BAA97064.1| unnamed protein product [Arabidopsis thaliana] gb|AAL36202.1| putative RNA-binding protein [Ar 0.0
Blast2go: protein 0.0
unknown

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain