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Assembly Name: uagpf v2.0

Name: RNA recognition motif domain

Term: IPR000504  Help

Source: InterPro from Sma3


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
uagpf_v2_unigene52727 uagpf v2.0 519
AutoFact: splicing factor 3B subunit 4 [Arabidopsis thaliana] gb|AAD12222.1| putative spliceosome associated protein [Arabidopsis thaliana] gb|AAN12991.1| putative spliceosome-associated protein [Arabidopsis thaliana] gb|AEC06776.1| splicing factor 3B subunit 4 [Ar 0.0
FL-Next: tr=Spliceosome associated protein, putative; Ricinus communis (Castor bean). 0.0
Blast2go: splicing factor 3b subunit 4-like 0.0
Internal
uagpf_v2_unigene52763 uagpf v2.0 882
AutoFact: AAA-type ATPase family protein [Arabidopsis thaliana] gb|AED97923.1| AAA-type ATPase family protein [Arabidopsis thaliana] 0.0
FL-Next: tr=AAA-type ATPase family protein; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: aaa-type atpase family protein 0.0
C-terminus
uagpf_v2_unigene52767 uagpf v2.0 520
AutoFact: Heterogeneous nuclear ribonucleoprotein A3-like protein 2 n=3 Tax=Andropogoneae RepID=B6TV58_MAIZE 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: rna-binding protein 0.0
Putative N-terminus
uagpf_v2_unigene52892 uagpf v2.0 422
AutoFact: Arginine/serine-rich splicing factor, putative n=1 Tax=Ricinus communis RepID=B9SAR0_RICCO 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: pre-mrna-splicing factor sf2 0.0
Internal
uagpf_v2_unigene52906 uagpf v2.0 558
AutoFact: Unassigned protein
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
N-terminus
uagpf_v2_unigene52918 uagpf v2.0 474
AutoFact: Unassigned protein
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Putative N-terminus
uagpf_v2_unigene52964 uagpf v2.0 371
AutoFact: Splicing factor-like protein n=3 Tax=Vitis RepID=Q6R4Q7_VITRI 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: arginine serine-rich-splicing factor rsp40 0.0
N-terminus
uagpf_v2_unigene53002 uagpf v2.0 430
AutoFact: putative arginine/serine-rich protein [Arabidopsis thaliana] 9.99967e-42
Blast2go: protein arginine serine-rich 45 0.0
Coding
uagpf_v2_unigene53005 uagpf v2.0 473
AutoFact: Ninja-family protein AFP3 [Arabidopsis thaliana] ref|NP_001030794.1| Ninja-family protein AFP3 [Arabidopsis thaliana] ref|NP_001078222.1| Ninja-family protein AFP3 [Arabidopsis thaliana] sp|Q94F39.1|AFP3_ARATH RecName: Full=Ninja-family protein AFP3; AltN 3.0e-21
Blast2go: ninja-family protein afp3 2.3771e-27
Coding
uagpf_v2_unigene53096 uagpf v2.0 403
AutoFact: RNA recognition motif-containing protein [Arabidopsis thaliana] gb|AAK93596.1| unknown protein [Arabidopsis thaliana] gb|AAM14356.1| unknown protein [Arabidopsis thaliana] gb|AEE29148.1| RNA recognition motif-containing protein [Arabidopsis thaliana] 4.0e-14
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: protein vip1-like isoform 1 8.60089e-38
N-terminus
uagpf_v2_unigene53252 uagpf v2.0 480
AutoFact: Heterogeneous nuclear ribonucleoprotein 27C, putative n=1 Tax=Ricinus communis RepID=B9SQV8_RICCO 0.0
Blast2go: heterogeneous nuclear ribonucleoprotein 0.0
Putative coding
uagpf_v2_unigene53316 uagpf v2.0 378
AutoFact: Nucleic acid binding protein, putative n=1 Tax=Ricinus communis RepID=B9RQ14_RICCO 5.0e-27
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: protein 0.0
N-terminus
uagpf_v2_unigene53333 uagpf v2.0 476
AutoFact: RNA recognition motif-containing protein [Arabidopsis thaliana] ref|NP_974317.1| RNA recognition motif-containing protein [Arabidopsis thaliana] dbj|BAA97064.1| unnamed protein product [Arabidopsis thaliana] gb|AAL36202.1| putative RNA-binding protein [Ar 2.0e-27
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: rna recognition motif-containing protein 0.0
N-terminus
uagpf_v2_unigene53372 uagpf v2.0 416
AutoFact: Arginine/serine-rich splicing factor RSP41, putative [Solanum demissum] 5.0e-09
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: arginine serine-rich splicing factor rsp41 2.22733e-15
N-terminus
uagpf_v2_unigene53379 uagpf v2.0 474
AutoFact: RNA recognition motif and CCHC-type zinc finger domain-containing protein [Arabidopsis thaliana] gb|AAL11606.1|AF424613_1 AT3g26420/F20C19_14 [Arabidopsis thaliana] dbj|BAB02203.1| unnamed protein product [Arabidopsis thaliana] gb|AAK96804.1| Unknown prot 7.0e-35
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: rna recognition motif family expressed 0.0
N-terminus
uagpf_v2_unigene53405 uagpf v2.0 476
AutoFact: RNA-binding protein [Medicago truncatula] 5.0e-20
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: protein 0.0
C-terminus
uagpf_v2_unigene53504 uagpf v2.0 327
AutoFact: splicing factor 3B subunit 4 [Arabidopsis thaliana] gb|AAD12222.1| putative spliceosome associated protein [Arabidopsis thaliana] gb|AAN12991.1| putative spliceosome-associated protein [Arabidopsis thaliana] gb|AEC06776.1| splicing factor 3B subunit 4 [Ar 0.0
FL-Next: tr=Spliceosome associated protein, putative; Ricinus communis (Castor bean). 0.0
Blast2go: splicing factor 3b subunit 4-like 0.0
Internal
uagpf_v2_unigene53543 uagpf v2.0 265
AutoFact: Unassigned protein
unknown
uagpf_v2_unigene53561 uagpf v2.0 392
AutoFact: Arginine/serine-rich splicing factor RSP41, putative [Solanum demissum] 2.0e-29
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: protein 0.0
Putative N-terminus
uagpf_v2_unigene53611 uagpf v2.0 536
AutoFact: RNA-binding protein [Medicago truncatula] 2.0e-33
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: protein 0.0
C-terminus

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain