Sustainpine_db
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Assembly Name: uagpf v2.0

Name: RNA recognition motif domain

Term: IPR000504  Help

Source: InterPro from Sma3

UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
 Full-Length
uagpf_v2_unigene51785 uagpf v2.0 317
• AutoFact: putative RNA-binding protein [Arabidopsis thaliana] 2.0e-23
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: protein 5.27663e-40
N-terminus
uagpf_v2_unigene51832 uagpf v2.0 251
• AutoFact: nuclear transport factor 2 and RNA recognition motif domain-containing protein [Arabidopsis thaliana] dbj|BAB10647.1| unnamed protein product [Arabidopsis thaliana] gb|AAL32982.1| AT5g60980/MSL3_100 [Arabidopsis thaliana] gb|AAO23575.1| At5g60980/MSL3_100 0.0
• Blast2go: rna binding 0.0
unknown
uagpf_v2_unigene51898 uagpf v2.0 537
• AutoFact: Unassigned protein
• Blast2go: uncharacterized protein mitochondrial-like 0.0
unknown
uagpf_v2_unigene51981 uagpf v2.0 518
• AutoFact: Os01g0367300 protein n=1 Tax=Oryza sativa Japonica Group RepID=Q5JJM4_ORYSJ 7.0e-19
• Blast2go: copper ion binding 3.29634e-21
unknown
uagpf_v2_unigene52035 uagpf v2.0 301
• AutoFact: nuclear transport factor 2 and RNA recognition motif domain-containing protein [Arabidopsis thaliana] dbj|BAB10647.1| unnamed protein product [Arabidopsis thaliana] gb|AAL32982.1| AT5g60980/MSL3_100 [Arabidopsis thaliana] gb|AAO23575.1| At5g60980/MSL3_100 0.0
• Blast2go: rna binding 0.0
unknown
uagpf_v2_unigene52042 uagpf v2.0 434
• AutoFact: translation initiation factor 3 subunit B [Arabidopsis thaliana] sp|Q9C5Z1.1|EIF3B_ARATH RecName: Full=Eukaryotic translation initiation factor 3 subunit B; Short=eIF3b; AltName: Full=eIF-3-eta; AltName: Full=eIF3 p110; AltName: Full=p82 gb|AAG53615.1|AF2 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: eukaryotic translation initiation factor 3 subunit b-like 0.0
C-terminus
uagpf_v2_unigene52049 uagpf v2.0 451
• AutoFact: Unassigned protein
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
N-terminus
uagpf_v2_unigene52091 uagpf v2.0 662
• AutoFact: transformer-SR ribonucleoprotein [Nicotiana tabacum] 5.0e-35
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: transformer-sr ribonucleoprotein 0.0
C-terminus
uagpf_v2_unigene52140 uagpf v2.0 332
• AutoFact: RNA recognition motif-containing protein [Arabidopsis thaliana] gb|AED98140.1| RNA recognition motif-containing protein [Arabidopsis thaliana] 0.0
• Blast2go: heterogeneous nuclear 0.0
unknown
uagpf_v2_unigene52162 uagpf v2.0 434
• AutoFact: nuclear transport factor 2 and RNA recognition motif domain-containing protein [Arabidopsis thaliana] dbj|BAB09056.1| unnamed protein product [Arabidopsis thaliana] gb|AAL86001.1| unknown protein [Arabidopsis thaliana] gb|AAM45065.1| unknown protein [Arab 0.0
• Blast2go: ras-gtpase-activating protein-binding 0.0
Putative coding
uagpf_v2_unigene52172 uagpf v2.0 391
• AutoFact: Splicing factor-like protein n=3 Tax=Vitis RepID=Q6R4Q7_VITRI 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: arginine serine-rich-splicing factor rsp41 0.0
C-terminus
uagpf_v2_unigene52268 uagpf v2.0 228
• AutoFact: Heterogeneous nuclear ribonucleoprotein A3-like protein 2 n=3 Tax=Andropogoneae RepID=B6TV58_MAIZE 1.0e-08
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: rna recognition motif-containing protein 4.12995e-21
Internal
uagpf_v2_unigene52299 uagpf v2.0 420
• AutoFact: RNA recognition motif-containing protein [Arabidopsis thaliana] gb|AEE27574.1| RNA recognition motif-containing protein [Arabidopsis thaliana] 1.0e-24
• Blast2go: protein 9.46524e-34
unknown
uagpf_v2_unigene52305 uagpf v2.0 403
• AutoFact: nucleic acid binding protein1 [Zea mays] gb|AAA33486.1| nucleic acid-binding protein [Zea mays] gb|ACG38158.1| ribonucleoprotein [Zea mays] gb|ACL52389.1| unknown [Zea mays] 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: 31 kda chloroplastic-like 0.0
C-terminus
uagpf_v2_unigene52387 uagpf v2.0 531
• AutoFact: Unassigned protein
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: unknown [Picea sitchensis] 1.1689e-08
C-terminus
uagpf_v2_unigene52451 uagpf v2.0 249
• AutoFact: putative RNA-binding protein RBP37 [Oryza sativa Japonica Group] dbj|BAG24017.1| RNA-binding protein [Oryza sativa Japonica Group] dbj|BAG95850.1| unnamed protein product [Oryza sativa Japonica Group] gb|EEE67936.1| hypothetical protein OsJ_25822 [Oryza s 0.0
• Blast2go: rna-binding protein rbp37 0.0
unknown
uagpf_v2_unigene52479 uagpf v2.0 335
• AutoFact: RNA recognition water-stress protein1 [Zea mays] gb|AAN04093.1| water-stress protein [Zea mays] 0.0
• Blast2go: rna binding 0.0
unknown
uagpf_v2_unigene52659 uagpf v2.0 500
• AutoFact: Heterogeneous nuclear ribonucleoprotein 27C, putative n=1 Tax=Ricinus communis RepID=B9SQV8_RICCO 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: heterogeneous nuclear ribonucleoprotein 0.0
C-terminus
uagpf_v2_unigene52673 uagpf v2.0 385
• AutoFact: Plastidic phosphate translocator-like protein1 n=1 Tax=Mesembryanthemum crystallinum RepID=Q59IV6_MESCR 4.0e-33
• Blast2go: plastidic phosphate translocator-like protein1 0.0
unknown
uagpf_v2_unigene52698 uagpf v2.0 469
• AutoFact: Strictosidine synthase, putative n=1 Tax=Ricinus communis RepID=B9RJ21_RICCO 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: strictosidine synthase family protein 0.0
Internal

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain