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Assembly Name: uagpf v2.0

Name: RNA recognition motif domain

Term: IPR000504  Help

Source: InterPro from Sma3


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
uagpf_v2_unigene49897 uagpf v2.0 512
AutoFact: RNA-binding protein [Medicago truncatula] 2.0e-31
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: protein 0.0
N-terminus
uagpf_v2_unigene49919 uagpf v2.0 745
AutoFact: splicing factor [Oryza sativa Indica Group] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: splicing factor 0.0
Internal
uagpf_v2_unigene49948 uagpf v2.0 452
AutoFact: Unassigned protein
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: nucleic acid binding 0.0
C-terminus
uagpf_v2_unigene49988 uagpf v2.0 457
AutoFact: putative heterogeneous nuclear ribonucleoprotein [Vitis vinifera] 0.0
Blast2go: protein 0.0
Coding
uagpf_v2_unigene49995 uagpf v2.0 546
AutoFact: RNA binding protein, putative n=1 Tax=Ricinus communis RepID=B9S3Y1_RICCO 0.0
Blast2go: rna binding 0.0
unknown
uagpf_v2_unigene50034 uagpf v2.0 509
AutoFact: RHO guanyl-nucleotide exchange factor 9 [Arabidopsis thaliana] emb|CAB41934.1| putative protein [Arabidopsis thaliana] emb|CAB78366.1| putative protein [Arabidopsis thaliana] gb|ABE66063.1| hypothetical protein At4g13240 [Arabidopsis thaliana] gb|AEE83250 0.0
Blast2go: protein 0.0
Putative coding
uagpf_v2_unigene50106 uagpf v2.0 502
AutoFact: Receptor-like kinase n=1 Tax=Marchantia polymorpha RepID=A7VM23_MARPO 0.0
FL-Next: tr=Putative uncharacterized protein; Ricinus communis (Castor bean). 0.0
Blast2go: protein 0.0
Complete
uagpf_v2_unigene50131 uagpf v2.0 757
AutoFact: NTF2 domain containing protein 3.0e-16
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: low quality protein: g3bp-like 0.0
N-terminus
uagpf_v2_unigene50175 uagpf v2.0 352
AutoFact: Receptor-like kinase n=1 Tax=Marchantia polymorpha RepID=A7VM23_MARPO 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: protein 0.0
Internal
uagpf_v2_unigene50203 uagpf v2.0 328
AutoFact: Phosphofructokinase, putative n=1 Tax=Ricinus communis RepID=B9RRX6_RICCO 0.0
Blast2go: 6-phosphofructokinase 3-like 0.0
Putative coding
uagpf_v2_unigene50259 uagpf v2.0 472
AutoFact: Os01g0367300 protein n=1 Tax=Oryza sativa Japonica Group RepID=Q5JJM4_ORYSJ 7.0e-19
Blast2go: copper ion binding 3.29634e-21
Putative coding
uagpf_v2_unigene50284 uagpf v2.0 278
AutoFact: putative galactinol--sucrose galactosyltransferase 6 [Arabidopsis thaliana] gb|AAL90901.1| AT5g20250/F5O24_140 [Arabidopsis thaliana] gb|AAN18198.1| At5g20250/F5O24_140 [Arabidopsis thaliana] dbj|BAE99252.1| seed imbitition protein-like [Arabidopsis thali 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: galactinol--sucrose galactosyltransferase 6 0.0
C-terminus
uagpf_v2_unigene50290 uagpf v2.0 313
AutoFact: DUF1777 multi-domain protein 1.0e-15
Blast2go: splicing factor u2af large subunit b 0.0
Coding
uagpf_v2_unigene50300 uagpf v2.0 425
AutoFact: pfam01762, Galactosyl_T, Galactosyltransferase 0.0
Blast2go: glycosyltransferase-like protein 0.0
unknown
uagpf_v2_unigene50304 uagpf v2.0 253
AutoFact: putative RNA binding protein [Arabidopsis thaliana] 1.0e-07
Blast2go: glycine-rich rna-binding protein 7 6.73043e-14
unknown
uagpf_v2_unigene50320 uagpf v2.0 394
AutoFact: pfam07002, Copine, Copine 6.99949e-42
Blast2go: e3 ubiquitin-protein ligase rglg2 0.0
unknown
uagpf_v2_unigene50323 uagpf v2.0 426
AutoFact: splicing factor [Oryza sativa Indica Group] 2.0e-28
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Blast2go: arginine serine-rich splicing 1.27215e-36
Complete
uagpf_v2_unigene50328 uagpf v2.0 262
AutoFact: Putative RNA-binding protein n=1 Tax=Solanum lycopersicum RepID=B1N661_SOLLC 0.0
FL-Next: sp=Zinc finger CCCH domain-containing protein 40; Oryza sativa subsp. japonica (Rice). 0.0
Blast2go: zinc finger ccch domain-containing protein 40-like 0.0
Internal
uagpf_v2_unigene50447 uagpf v2.0 386
AutoFact: Unassigned protein
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: unknown [Picea sitchensis] 2.94784e-30
N-terminus
uagpf_v2_unigene50470 uagpf v2.0 494
AutoFact: Filament_head multi-domain protein 1.0e-07
Coding

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain