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Assembly Name: uagpf v2.0

Name: RNA recognition motif domain

Term: IPR000504  Help

Source: InterPro from Sma3


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
uagpf_v2_unigene43883 uagpf v2.0 242
AutoFact: strictosidine synthase-like 3 [Arabidopsis thaliana] gb|AAL31926.1|AF419594_1 At1g08470/T27G7_9 [Arabidopsis thaliana] gb|AAL36403.1| unknown protein [Arabidopsis thaliana] gb|AAM51389.1| unknown protein [Arabidopsis thaliana] gb|AEE28296.1| strictosidine 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: strictosidine synthase family protein 0.0
Internal
uagpf_v2_unigene44018 uagpf v2.0 401
AutoFact: Unassigned protein
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
N-terminus
uagpf_v2_unigene44468 uagpf v2.0 203
AutoFact: Putative RRM-containing protein SEB-4 n=3 Tax=Poaceae RepID=Q5N8W4_ORYSJ 2.0e-27
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: rrm-containing protein seb-4 3.30107e-27
Internal
uagpf_v2_unigene45277 uagpf v2.0 461
AutoFact: Homeobox transcription factor n=1 Tax=Jatropha curcas RepID=D6PAP4_9ROSI 1.0e-06
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: uncharacterized protein at1g27050-like 0.0
C-terminus
uagpf_v2_unigene45460 uagpf v2.0 312
AutoFact: Unassigned protein
FL-Next: tr=Putative uncharacterized protein; Selaginella moellendorffii (Spikemoss). 0.0
Blast2go: squamous cell carcinoma antigen recognized by t-cells 3-like 0.0
Internal
uagpf_v2_unigene45569 uagpf v2.0 375
AutoFact: DUF1777 multi-domain protein 5.0e-13
Blast2go: p30 dbc 0.0
unknown
uagpf_v2_unigene45889 uagpf v2.0 374
AutoFact: AAA-metalloprotease FtsH [Pisum sativum] 0.0
FL-Next: sp=ATP-dependent zinc metalloprotease FTSH 3, mitochondrial; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: protein 0.0
Internal
uagpf_v2_unigene45942 uagpf v2.0 228
AutoFact: putative beta-1,3-galactosyltransferase 6 [Arabidopsis thaliana] sp|Q9MAP8.1|B3GT6_ARATH RecName: Full=Probable beta-1,3-galactosyltransferase 6 gb|AAF31275.1|AC006424_4 Highly similar to avr9 [Arabidopsis thaliana] gb|AAP21243.1| At1g32930 [Arabidopsis t 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: glycosyltransferase-like protein 0.0
Putative C-terminus
uagpf_v2_unigene45949 uagpf v2.0 228
AutoFact: strictosidine synthase-like 3 [Arabidopsis thaliana] gb|AAL31926.1|AF419594_1 At1g08470/T27G7_9 [Arabidopsis thaliana] gb|AAL36403.1| unknown protein [Arabidopsis thaliana] gb|AAM51389.1| unknown protein [Arabidopsis thaliana] gb|AEE28296.1| strictosidine 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: strictosidine synthase family protein 0.0
Internal
uagpf_v2_unigene46079 uagpf v2.0 355
AutoFact: Unassigned protein
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: unknown [Picea sitchensis] 1.20909e-29
Putative N-terminus
uagpf_v2_unigene46133 uagpf v2.0 326
AutoFact: sarcoplasmic reticulum protein-like protein [Oryza sativa Japonica Group] gb|AAS07364.1| sarcoplasmic reticulum protein (with alternative splicing) [Oryza sativa Japonica Group] gb|ABF99835.1| RNA-binding protein Luc7-like 2, putative, expressed [Oryza sa 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: rna-binding protein luc7-like expressed 0.0
N-terminus
uagpf_v2_unigene46169 uagpf v2.0 274
AutoFact: Zinc finger protein, putative n=1 Tax=Ricinus communis RepID=B9R9V5_RICCO 0.0
FL-Next: tr=Zinc finger protein, putative; Ricinus communis (Castor bean). 0.0
Blast2go: splicing factor 1 0.0
Internal
uagpf_v2_unigene46793 uagpf v2.0 334
AutoFact: Rop guanine nucleotide exchange factor 1 [Arabidopsis thaliana] sp|Q93ZY2.2|ROGF1_ARATH RecName: Full=Rop guanine nucleotide exchange factor 1; Short=RopGEF1; AltName: Full=Kinase partner protein-like; Short=KPP-like emb|CAB37499.1| putative protein [Arab 0.0
FL-Next: sp=Rop guanine nucleotide exchange factor 1; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: protein 0.0
Internal
uagpf_v2_unigene46835 uagpf v2.0 271
AutoFact: RNA-binding protein-like [Oryza sativa Japonica Group] gb|EEE69405.1| hypothetical protein OsJ_28765 [Oryza sativa Japonica Group] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: rna binding 0.0
Internal
uagpf_v2_unigene46975 uagpf v2.0 252
AutoFact: Ropgefa ROP GTPase guanyl-nucleotide exchange factor, PRONE domain-containing (Fragment) n=1 Tax=Physcomitrella patens subsp. patens RepID=A9RG21_PHYPA 2.0e-11
FL-Next: sp=Rho guanine nucleotide exchange factor 8; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: rho guanine nucleotide exchange factor 8-like 7.09037e-12
Internal
uagpf_v2_unigene47174 uagpf v2.0 298
AutoFact: Stachyose synthase, putative n=1 Tax=Ricinus communis RepID=B9SXA4_RICCO 0.0
FL-Next: sp=Probable galactinol--sucrose galactosyltransferase 1; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: alkaline alpha galactosidase i 0.0
Internal
uagpf_v2_unigene47226 uagpf v2.0 375
AutoFact: RNA-binding protein MEI2, putative; 36123-32976 [Arabidopsis thaliana] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: protein mei2-like 2-like 0.0
Internal
uagpf_v2_unigene47290 uagpf v2.0 455
AutoFact: Heterogeneous nuclear ribonucleoprotein A1/A3 n=2 Tax=Arabidopsis RepID=Q9FM47_ARATH 7.0e-38
Blast2go: rna recognition motif-containing protein 0.0
unknown
uagpf_v2_unigene47327 uagpf v2.0 509
AutoFact: RNA recognition motif (RRM)-containing protein [Arabidopsis thaliana] gb|AEE76829.1| RNA recognition motif (RRM)-containing protein [Arabidopsis thaliana] 0.0
Blast2go: rna recognition motif -containing protein 0.0
unknown
uagpf_v2_unigene47470 uagpf v2.0 472
AutoFact: Unassigned protein
Blast2go: protein 0.0
unknown

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain