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Assembly Name: uagpf v2.0

Name: RNA recognition motif domain

Term: IPR000504  Help

Source: InterPro from Sma3


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
uagpf_v2_unigene12496 uagpf v2.0 1290
AutoFact: putative pre-mRNA splicing factor SF2 [Oryza sativa Japonica Group] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: arginine serine-rich splicing 0.0
N-terminus
uagpf_v2_unigene12538 uagpf v2.0 569
AutoFact: polypyrimidine tract-binding-like [Solanum tuberosum] 0.0
Blast2go: polypyrimidine tract-binding protein homolog 2-like 0.0
unknown
uagpf_v2_unigene12546 uagpf v2.0 533
AutoFact: RNA recognition motif-containing protein [Arabidopsis thaliana] ref|NP_974937.1| RNA recognition motif-containing protein [Arabidopsis thaliana] gb|AAK92731.1| putative RNA-binding protein [Arabidopsis thaliana] gb|AAM20100.1| putative RNA-binding protein 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: heterogeneous nuclear ribonucleoprotein 0.0
N-terminus
uagpf_v2_unigene12662 uagpf v2.0 1354
AutoFact: RHO guanyl-nucleotide exchange factor 9 [Arabidopsis thaliana] emb|CAB41934.1| putative protein [Arabidopsis thaliana] emb|CAB78366.1| putative protein [Arabidopsis thaliana] gb|ABE66063.1| hypothetical protein At4g13240 [Arabidopsis thaliana] gb|AEE83250 0.0
FL-Next: sp=Rho guanine nucleotide exchange factor 8; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: protein 0.0
C-terminus
uagpf_v2_unigene12720 uagpf v2.0 638
AutoFact: polypyrimidine tract-binding protein-like [Solanum tuberosum] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: polypyrimidine tract-binding protein homolog 2-like 0.0
N-terminus
uagpf_v2_unigene12735 uagpf v2.0 744
AutoFact: Nucleotide-sugar transporter family protein [Arabidopsis thaliana] sp|Q9LRP2.1|PT317_ARATH RecName: Full=Probable sugar phosphate/phosphate translocator At3g17430 dbj|BAB02919.1| unnamed protein product [Arabidopsis thaliana] gb|AAL24335.1| Unknown protei 1.0e-26
Blast2go: probable sugar phosphate phosphate translocator at3g17430-like 2.12575e-30
unknown
uagpf_v2_unigene12739 uagpf v2.0 441
AutoFact: Splicing factor-like protein n=3 Tax=Vitis RepID=Q6R4Q7_VITRI 1.0e-20
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: arginine serine-rich splicing 0.0
Complete
uagpf_v2_unigene12793 uagpf v2.0 589
AutoFact: RNA-binding protein n=1 Tax=Nicotiana tabacum RepID=Q941H9_TOBAC 3.0e-36
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: glycine-rich rna-binding 0.0
N-terminus
uagpf_v2_unigene12809 uagpf v2.0 840
AutoFact: Receptor-like kinase n=1 Tax=Marchantia polymorpha RepID=A7VM23_MARPO 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: protein 0.0
C-terminus
uagpf_v2_unigene12858 uagpf v2.0 850
AutoFact: Unassigned protein
FL-Next: sp=Desiccation-related protein PCC13-62; Craterostigma plantagineum. 0.0
Blast2go: desiccation-related protein pcc13-62-like 0.0
N-terminus
uagpf_v2_unigene12920 uagpf v2.0 460
AutoFact: FAP multi-domain protein 2.0e-18
Coding
uagpf_v2_unigene13022 uagpf v2.0 687
AutoFact: RNA recognition motif-containing protein [Arabidopsis thaliana] dbj|BAD94469.1| putative RNA-binding protein [Arabidopsis thaliana] dbj|BAF01884.1| putative RNA-binding protein [Arabidopsis thaliana] gb|AEC10093.1| RNA recognition motif-containing protein 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: rna-binding protein with multiple splicing 0.0
Internal
uagpf_v2_unigene13076 uagpf v2.0 1303
AutoFact: RNA recognition motif-containing protein [Arabidopsis thaliana] dbj|BAB03120.1| unnamed protein product [Arabidopsis thaliana] gb|AAL85976.1| unknown protein [Arabidopsis thaliana] gb|AAM67536.1| unknown protein [Arabidopsis thaliana] dbj|BAD94504.1| hypo 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: heterogeneous nuclear ribonucleoprotein 0.0
Putative Complete
uagpf_v2_unigene13112 uagpf v2.0 576
AutoFact: glycine-rich RNA-binding protein-like [Arabidopsis thaliana] 7.0e-28
Blast2go: glycine-rich rna-binding 1.32014e-36
unknown
uagpf_v2_unigene13120 uagpf v2.0 1282
AutoFact: Arginine/serine-rich-splicing factor, putative n=1 Tax=Ricinus communis RepID=B9SXC4_RICCO 5.0e-38
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: protein 0.0
Complete
uagpf_v2_unigene13147 uagpf v2.0 578
AutoFact: glycine-rich RNA-binding protein 3 [Arabidopsis thaliana] dbj|BAB10366.1| unnamed protein product [Arabidopsis thaliana] gb|AAL31194.1| AT5g61030/maf19_30 [Arabidopsis thaliana] gb|AAM78058.1| AT5g61030/maf19_30 [Arabidopsis thaliana] dbj|BAH30642.1| hypo 1.0e-32
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: glycine-rich rna-binding 0.0
N-terminus
uagpf_v2_unigene13151 uagpf v2.0 758
AutoFact: putative RRM-containing protein SEB-4 [Oryza sativa Japonica Group] dbj|BAD82096.1| putative RRM-containing protein SEB-4 [Oryza sativa Japonica Group] gb|EAY76689.1| hypothetical protein OsI_04643 [Oryza sativa Indica Group] gb|EAZ14353.1| hypothetical p 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: rna-binding region-containing 0.0
C-terminus
uagpf_v2_unigene13197 uagpf v2.0 600
AutoFact: FERONIA receptor-like kinase [Cardamine flexuosa] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: feronia receptor-like kinase 0.0
Internal
uagpf_v2_unigene13211 uagpf v2.0 1097
AutoFact: putative arginine/serine-rich splicing factor [Medicago sativa subsp. x varia] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: splicing arginine serine-rich 0.0
Complete
uagpf_v2_unigene13216 uagpf v2.0 803
AutoFact: zinc finger CCCH domain-containing protein 24 [Arabidopsis thaliana] sp|Q8L7S3.1|C3H24_ARATH RecName: Full=Zinc finger CCCH domain-containing protein 24; Short=AtC3H24 gb|AAM91097.1| At2g28450/T1B3.3 [Arabidopsis thaliana] gb|AAN72304.1| At2g28450/T1B3.3 0.0
FL-Next: sp=Zinc finger CCCH domain-containing protein 24; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: zinc finger ccch domain-containing protein 24-like 0.0
C-terminus

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain