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Assembly Name: uagpf v2.0

Name: RNA recognition motif domain

Term: IPR000504  Help

Source: InterPro from Sma3

UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
 Full-Length
uagpf_v2_unigene11759 uagpf v2.0 417
• AutoFact: HIV Tat-specific factor 1 [Arabidopsis thaliana] emb|CAC01867.1| putative protein [Arabidopsis thaliana] gb|AAY25436.1| At5g16260 [Arabidopsis thaliana] dbj|BAF01062.1| hypothetical protein [Arabidopsis thaliana] gb|AED92266.1| HIV Tat-specific factor 1 [ 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: hiv tat-specific factor 1 homolog 0.0
N-terminus
uagpf_v2_unigene11895 uagpf v2.0 552
• AutoFact: poly(A)-binding protein [Cucumis sativus] 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: poly -binding protein 0.0
C-terminus
uagpf_v2_unigene11897 uagpf v2.0 612
• AutoFact: RNA recognition motif-containing protein [Arabidopsis thaliana] dbj|BAB03120.1| unnamed protein product [Arabidopsis thaliana] gb|AAL85976.1| unknown protein [Arabidopsis thaliana] gb|AAM67536.1| unknown protein [Arabidopsis thaliana] dbj|BAD94504.1| hypo 0.0
• Blast2go: heterogeneous nuclear ribonucleoprotein 0.0
Coding
uagpf_v2_unigene11905 uagpf v2.0 783
• AutoFact: Heterogeneous nuclear ribonucleoprotein 27C, putative n=1 Tax=Ricinus communis RepID=B9SQV8_RICCO 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: heterogeneous nuclear ribonucleoprotein 0.0
N-terminus
uagpf_v2_unigene11958 uagpf v2.0 3490
• AutoFact: Whole genome shotgun sequence of line PN40024, scaffold_21.assembly12x (Fragment) n=3 Tax=Vitis vinifera RepID=D7SM13_VITVI 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: rna binding 0.0
Complete
uagpf_v2_unigene12001 uagpf v2.0 616
• AutoFact: Unassigned protein
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
N-terminus
uagpf_v2_unigene12041 uagpf v2.0 541
• AutoFact: FERONIA receptor-like kinase [Cardamine flexuosa] 0.0
• Blast2go: feronia receptor-like kinase 0.0
unknown
uagpf_v2_unigene12061 uagpf v2.0 777
• AutoFact: RNA-binding protein AKIP1-like n=1 Tax=Solanum tuberosum RepID=Q2V9B8_SOLTU 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: rna recognition motif-containing protein 0.0
C-terminus
uagpf_v2_unigene12067 uagpf v2.0 1405
• AutoFact: RNA recognition motif-containing protein [Arabidopsis thaliana] gb|AED98140.1| RNA recognition motif-containing protein [Arabidopsis thaliana] 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: heterogeneous nuclear 0.0
Complete
uagpf_v2_unigene12084 uagpf v2.0 1138
• AutoFact: [R] COG0724 RNA-binding proteins (RRM domain) 1.0e-22
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: protein 0.0
Complete
uagpf_v2_unigene12095 uagpf v2.0 433
• AutoFact: Glycine-rich RNA-binding protein, putative n=1 Tax=Ricinus communis RepID=B9T555_RICCO 2.0e-29
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: protein 1.71132e-36
N-terminus
uagpf_v2_unigene12107 uagpf v2.0 1774
• AutoFact: RNA-binding protein with multiple splicing, putative n=1 Tax=Ricinus communis RepID=B9SG87_RICCO 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: cell wall integrity protein scw1 0.0
Complete
uagpf_v2_unigene12157 uagpf v2.0 823
• AutoFact: RNA recognition water-stress protein1 [Zea mays] gb|AAN04093.1| water-stress protein [Zea mays] 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: rna binding 0.0
C-terminus
uagpf_v2_unigene12169 uagpf v2.0 2012
• AutoFact: nuclear transport factor 2 and RNA recognition motif domain-containing protein [Arabidopsis thaliana] dbj|BAB09056.1| unnamed protein product [Arabidopsis thaliana] gb|AAL86001.1| unknown protein [Arabidopsis thaliana] gb|AAM45065.1| unknown protein [Arab 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: ras-gtpase-activating protein-binding 0.0
Complete
uagpf_v2_unigene12222 uagpf v2.0 438
• AutoFact: Polypyrimidine tract-binding protein homolog 3 n=4 Tax=Arabidopsis RepID=PTBP3_ARATH 7.0e-34
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: polypyrimidine tract-binding protein 3 0.0
N-terminus
uagpf_v2_unigene12252 uagpf v2.0 799
• AutoFact: tobacco nucleolin [Nicotiana tabacum] 9.99995e-41
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: rna-binding protein 1.68156e-44
Putative Complete
uagpf_v2_unigene12259 uagpf v2.0 697
• AutoFact: glycine-rich RNA-binding protein 3 [Arabidopsis thaliana] dbj|BAB10366.1| unnamed protein product [Arabidopsis thaliana] gb|AAL31194.1| AT5g61030/maf19_30 [Arabidopsis thaliana] gb|AAM78058.1| AT5g61030/maf19_30 [Arabidopsis thaliana] dbj|BAH30642.1| hypo 1.0e-32
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: glycine-rich rna-binding 0.0
C-terminus
uagpf_v2_unigene12335 uagpf v2.0 1274
• AutoFact: Unassigned protein
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: nucleic acid binding 0.0
Complete
uagpf_v2_unigene12382 uagpf v2.0 480
• AutoFact: Glycine-rich RNA-binding protein n=4 Tax=Pinaceae RepID=Q9XEL4_PICGL 4.0e-37
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: glycine-rich rna binding protein 0.0
N-terminus
uagpf_v2_unigene12414 uagpf v2.0 620
• AutoFact: putative RNA-binding protein MEI2 [Arabidopsis thaliana] 0.0
• FL-Next: sp=Protein MEI2-like 4; Oryza sativa subsp. japonica (Rice). 0.0
• Blast2go: protein mei2-like 4-like 0.0
Internal

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain