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Assembly Name: uagpf v2.0

Name: RNA recognition motif domain

Term: IPR000504  Help

Source: InterPro from Sma3


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
uagpf_v2_unigene10783 uagpf v2.0 371
AutoFact: endonuclease III [Arabidopsis thaliana] gb|AAD26474.2| putative endonuclease [Arabidopsis thaliana] gb|AEC08549.1| endonuclease III [Arabidopsis thaliana] 3.0e-34
FL-Next: tr=Predicted protein; subsp. trichocarpa). 0.0
Blast2go: endonuclease iii 1.4013e-44
C-terminus
uagpf_v2_unigene10846 uagpf v2.0 768
AutoFact: Whole genome shotgun sequence of line PN40024, scaffold_61.assembly12x (Fragment) n=1 Tax=Vitis vinifera RepID=D7SNG6_VITVI 0.0
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Blast2go: hydroxyproline-rich glyco protein 0.0
C-terminus
uagpf_v2_unigene10958 uagpf v2.0 532
AutoFact: zinc finger CCCH domain-containing protein 18 [Arabidopsis thaliana] sp|Q9SJ41.1|C3H18_ARATH RecName: Full=Zinc finger CCCH domain-containing protein 18; Short=AtC3H18 gb|AAD29054.1| hypothetical protein [Arabidopsis thaliana] gb|AEC05899.1| zinc finger C 0.0
Blast2go: zinc finger ccch domain-containing protein 18-like 0.0
Putative coding
uagpf_v2_unigene10987 uagpf v2.0 691
AutoFact: MEI2-like protein 4 [Arabidopsis thaliana] sp|Q9LYN7.1|AML4_ARATH RecName: Full=Protein MEI2-like 4; Short=AML4; AltName: Full=MEI2-like protein 4 emb|CAB87285.1| Mei2-like protein [Arabidopsis thaliana] dbj|BAE99028.1| Mei2-like protein [Arabidopsis thal 0.0
Blast2go: protein mei2-like 4-like 0.0
Putative coding
uagpf_v2_unigene11043 uagpf v2.0 478
AutoFact: poly(A)-binding protein [Daucus carota] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: protein 0.0
N-terminus
uagpf_v2_unigene11045 uagpf v2.0 310
AutoFact: Unassigned protein
FL-Next: tr=Putative uncharacterized protein; Populus trichocarpa x Populus deltoides. 0.0
Blast2go: rna recognition motif family expressed 6.78625e-26
Internal
uagpf_v2_unigene11067 uagpf v2.0 423
AutoFact: MEI2-like protein 5 [Arabidopsis thaliana] ref|NP_849727.1| MEI2-like protein 5 [Arabidopsis thaliana] sp|Q8VWF5.1|AML5_ARATH RecName: Full=Protein MEI2-like 5; Short=AML5; AltName: Full=MEI2-like protein 5 gb|AAL32691.1| RNA-binding protein MEI2, putativ 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: protein mei2-like 2-like 0.0
Internal
uagpf_v2_unigene11126 uagpf v2.0 895
AutoFact: PREDICTED: similar to Polyadenylate-binding protein 4 (Poly(A)-binding protein 4) (PABP 4) (Inducible poly(A)-binding protein) (iPABP) (Activated-platelet protein-1) (APP-1) isoform 17 [Canis familiaris] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: poly binding cytoplasmic 1 0.0
Internal
uagpf_v2_unigene11172 uagpf v2.0 1328
AutoFact: polypyrimidine tract-binding protein-like [Solanum tuberosum] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: polypyrimidine tract-binding protein homolog 2-like 0.0
C-terminus
uagpf_v2_unigene11194 uagpf v2.0 859
AutoFact: DUF1777 multi-domain protein 1.0e-15
Blast2go: splicing factor u2af large subunit b 0.0
Coding
uagpf_v2_unigene11250 uagpf v2.0 1143
AutoFact: Mitochondrial respiratory chain complexes assembly protein AFG3, putative (EC:3.6.4.3); K08956 AFG3 family protein [EC:3.4.24.-] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: protein 0.0
Putative Complete
uagpf_v2_unigene11309 uagpf v2.0 1936
AutoFact: putative splicing factor [Arabidopsis thaliana] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: rna-binding protein 39-like 0.0
Complete
uagpf_v2_unigene11315 uagpf v2.0 548
AutoFact: DNA mismatch repair protein MLH1 [Arabidopsis thaliana] emb|CAA10163.1| MLH1 protein [Arabidopsis thaliana] emb|CAB78038.1| MLH1 protein [Arabidopsis thaliana] gb|AEE82726.1| DNA mismatch repair protein MLH1 [Arabidopsis thaliana] 0.0
FL-Next: tr=Os01g0958900 protein; Oryza sativa subsp. japonica (Rice). 0.0
Blast2go: dna mismatch repair protein mlh1 0.0
C-terminus
uagpf_v2_unigene11356 uagpf v2.0 414
AutoFact: RNA binding protein, putative n=1 Tax=Ricinus communis RepID=B9SEZ1_RICCO 2.0e-09
Blast2go: flowering time control protein fpa 0.0
unknown
uagpf_v2_unigene11380 uagpf v2.0 812
AutoFact: pfam05691, Raffinose_syn, Raffinose synthase or seed inhibition protein Sip1 0.0
FL-Next: sp=Probable galactinol--sucrose galactosyltransferase 2; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: alkaline alpha galactosidase 0.0
N-terminus
uagpf_v2_unigene11383 uagpf v2.0 1001
AutoFact: translation initiation factor 3 subunit B [Arabidopsis thaliana] sp|Q9C5Z1.1|EIF3B_ARATH RecName: Full=Eukaryotic translation initiation factor 3 subunit B; Short=eIF3b; AltName: Full=eIF-3-eta; AltName: Full=eIF3 p110; AltName: Full=p82 gb|AAG53615.1|AF2 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: eukaryotic translation initiation factor 3 subunit b-like 0.0
C-terminus
uagpf_v2_unigene11471 uagpf v2.0 513
AutoFact: RNA recognition motif (RRM)-containing protein [Arabidopsis thaliana] gb|AEE76829.1| RNA recognition motif (RRM)-containing protein [Arabidopsis thaliana] 0.0
FL-Next: tr=Predicted protein; subsp. trichocarpa). 0.0
Blast2go: rna recognition motif -containing protein 0.0
Internal
uagpf_v2_unigene11527 uagpf v2.0 367
AutoFact: Whole genome shotgun sequence of line PN40024, scaffold_68.assembly12x (Fragment) n=1 Tax=Vitis vinifera RepID=D7SVC9_VITVI 3.0e-28
Blast2go: protein 7.00649e-45
unknown
uagpf_v2_unigene11618 uagpf v2.0 1399
AutoFact: poly(A)-binding protein [Cucumis sativus] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: poly -binding protein 0.0
N-terminus
uagpf_v2_unigene11740 uagpf v2.0 391
AutoFact: Mitochondrial respiratory chain complexes assembly protein AFG3, putative (EC:3.6.4.3); K08956 AFG3 family protein [EC:3.4.24.-] 0.0
Blast2go: protein 0.0
unknown

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain