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Assembly Name: uagpf v2.0

Name: RNA recognition motif domain

Term: IPR000504  Help

Source: InterPro from Sma3


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
uagpf_v2_unigene9334 uagpf v2.0 708
AutoFact: zinc finger CCCH domain-containing protein 18 [Arabidopsis thaliana] sp|Q9SJ41.1|C3H18_ARATH RecName: Full=Zinc finger CCCH domain-containing protein 18; Short=AtC3H18 gb|AAD29054.1| hypothetical protein [Arabidopsis thaliana] gb|AEC05899.1| zinc finger C 0.0
FL-Next: sp=Zinc finger CCCH domain-containing protein 18; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: zinc finger ccch domain-containing protein 18-like 0.0
Internal
uagpf_v2_unigene9491 uagpf v2.0 391
AutoFact: RNA recognition motif-containing protein [Arabidopsis thaliana] gb|AEE35845.1| RNA recognition motif-containing protein [Arabidopsis thaliana] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: rna recognition motif-containing protein 0.0
N-terminus
uagpf_v2_unigene9646 uagpf v2.0 1118
AutoFact: splicing factor 3B subunit 4 [Arabidopsis thaliana] gb|AAD12222.1| putative spliceosome associated protein [Arabidopsis thaliana] gb|AAN12991.1| putative spliceosome-associated protein [Arabidopsis thaliana] gb|AEC06776.1| splicing factor 3B subunit 4 [Ar 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: splicing factor 3b subunit 4-like 0.0
Putative Complete
uagpf_v2_unigene9792 uagpf v2.0 236
AutoFact: putative galactinol--sucrose galactosyltransferase 6 [Arabidopsis thaliana] gb|AAL90901.1| AT5g20250/F5O24_140 [Arabidopsis thaliana] gb|AAN18198.1| At5g20250/F5O24_140 [Arabidopsis thaliana] dbj|BAE99252.1| seed imbitition protein-like [Arabidopsis thali 0.0
FL-Next: sp=Probable galactinol--sucrose galactosyltransferase 6; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: galactinol--sucrose galactosyltransferase 6 0.0
Internal
uagpf_v2_unigene9949 uagpf v2.0 258
AutoFact: Heterogeneous nuclear ribonucleoprotein A3-like protein 2 n=3 Tax=Andropogoneae RepID=B6TV58_MAIZE 0.0
Blast2go: rna-binding protein 0.0
unknown
uagpf_v2_unigene9973 uagpf v2.0 241
AutoFact: Phytochrome A-associated F-box protein, putative n=1 Tax=Ricinus communis RepID=B9SAQ8_RICCO 0.0
Blast2go: phytochrome a-associated f-box protein 0.0
Coding
uagpf_v2_unigene9977 uagpf v2.0 473
AutoFact: Phytochrome A-associated F-box protein, putative n=1 Tax=Ricinus communis RepID=B9SAQ8_RICCO 0.0
FL-Next: sp=Phytochrome A-associated F-box protein; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: phytochrome a-associated f-box protein 0.0
C-terminus
uagpf_v2_unigene10007 uagpf v2.0 526
AutoFact: putative beta-1,3-galactosyltransferase 2 [Arabidopsis thaliana] gb|AAK63859.1|AF389287_1 At1g05170/YUP8H12_22 [Arabidopsis thaliana] gb|AAB71461.1| Similar to Sequence 10 from patent 5477002 (gb|1253956) [Arabidopsis thaliana] gb|AAM47315.1| At1g05170/YU 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: galactosyltransferase family protein 0.0
C-terminus
uagpf_v2_unigene10092 uagpf v2.0 679
AutoFact: Receptor-like kinase n=1 Tax=Marchantia polymorpha RepID=A7VM23_MARPO 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: protein 0.0
Internal
uagpf_v2_unigene10223 uagpf v2.0 415
AutoFact: putative phosphate/phosphoenolpyruvate translocator protein [Arabidopsis thaliana] sp|Q9SKJ7.1|PT225_ARATH RecName: Full=Probable sugar phosphate/phosphate translocator At2g25520 gb|AAD20711.1| putative phosphate/phosphoenolpyruvate translocator protein [ 9.94922e-44
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: phosphate phosphoenolpyruvate translocator protein 0.0
N-terminus
uagpf_v2_unigene10305 uagpf v2.0 529
AutoFact: putative pre-mRNA splicing factor SF2 [Oryza sativa Japonica Group] 0.0
Blast2go: arginine serine-rich splicing 0.0
Coding
uagpf_v2_unigene10320 uagpf v2.0 746
AutoFact: zinc finger CCCH domain-containing protein 24 [Arabidopsis thaliana] sp|Q8L7S3.1|C3H24_ARATH RecName: Full=Zinc finger CCCH domain-containing protein 24; Short=AtC3H24 gb|AAM91097.1| At2g28450/T1B3.3 [Arabidopsis thaliana] gb|AAN72304.1| At2g28450/T1B3.3 0.0
FL-Next: sp=Zinc finger CCCH domain-containing protein 24; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: zinc finger ccch domain-containing protein 24-like 0.0
Internal
uagpf_v2_unigene10374 uagpf v2.0 466
AutoFact: Os08g0486200 protein n=3 Tax=Oryza sativa RepID=Q6ZDR7_ORYSJ 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: protein 0.0
N-terminus
uagpf_v2_unigene10433 uagpf v2.0 310
AutoFact: RNA recognition motif-containing protein [Arabidopsis thaliana] ref|NP_001031566.1| RNA recognition motif-containing protein [Arabidopsis thaliana] gb|AAK32943.1|AF367357_1 AT4g00830/A_TM018A10_14 [Arabidopsis thaliana] gb|AAM47474.1| AT4g00830/A_TM018A10 0.0
Blast2go: rna recognition motif-containing protein 0.0
Coding
uagpf_v2_unigene10464 uagpf v2.0 823
AutoFact: RNA recognition motif-containing protein [Arabidopsis thaliana] gb|AAM20679.1| unknown protein [Arabidopsis thaliana] gb|AAM61131.1| unknown [Arabidopsis thaliana] gb|AAN72206.1| unknown protein [Arabidopsis thaliana] gb|AEE76442.1| RNA recognition motif- 1.0e-23
FL-Next: sp=Glycine-rich RNA-binding protein 2, mitochondrial; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: rna recognition motif-containing protein 0.0
Complete
uagpf_v2_unigene10696 uagpf v2.0 659
AutoFact: RNA binding protein, putative n=1 Tax=Ricinus communis RepID=B9T7W6_RICCO 1.0e-21
FL-Next: sp=Zinc finger CCCH domain-containing protein 46; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: zinc finger ccch domain-containing protein 53-like 1.09144e-23
N-terminus
uagpf_v2_unigene10726 uagpf v2.0 598
AutoFact: RNA recognition motif-containing protein [Arabidopsis thaliana] ref|NP_974317.1| RNA recognition motif-containing protein [Arabidopsis thaliana] dbj|BAA97064.1| unnamed protein product [Arabidopsis thaliana] gb|AAL36202.1| putative RNA-binding protein [Ar 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: protein 0.0
N-terminus
uagpf_v2_unigene10734 uagpf v2.0 438
AutoFact: Squamous cell carcinoma antigen recognized by T-cells, putative n=1 Tax=Ricinus communis RepID=B9SPA3_RICCO 4.0e-37
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Blast2go: squamous cell carcinoma antigen recognized by t-cells 3-like 4.8611e-41
C-terminus
uagpf_v2_unigene10770 uagpf v2.0 421
AutoFact: La protein 1 [Arabidopsis thaliana] gb|AAL07086.1| unknown protein [Arabidopsis thaliana] gb|AEE86109.1| La protein 1 [Arabidopsis thaliana] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: la protein 1 0.0
Internal
uagpf_v2_unigene10778 uagpf v2.0 682
AutoFact: TPX2 (targeting protein for Xklp2) family protein [Arabidopsis thaliana] gb|AAU44468.1| hypothetical protein AT3G01015 [Arabidopsis thaliana] gb|AAY78731.1| hypothetical protein At3g01015 [Arabidopsis thaliana] gb|AEE73594.1| TPX2 (targeting protein for X 0.0
FL-Next: tr=Putative uncharacterized protein; Ricinus communis (Castor bean). 0.0
Blast2go: tpx2 (targeting protein for xklp2) family protein 0.0
C-terminus

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain