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Assembly Name: uagpf v2.0

Name: Zinc finger, PHD-type

Term: IPR001965  Help

Source: InterPro from Sma3


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
uagpf_v2_unigene17585 uagpf v2.0 740
AutoFact: Unassigned protein
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Blast2go: prolyl 4-hydroxylase subunit alpha-1 0.0
N-terminus
uagpf_v2_unigene17771 uagpf v2.0 714
AutoFact: ATP binding protein, putative n=1 Tax=Ricinus communis RepID=B9RRE2_RICCO 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: ankyrin-like protein 0.0
Complete
uagpf_v2_unigene18040 uagpf v2.0 872
AutoFact: PHD finger and bromo-adjacent homology domain-containing protein [Arabidopsis thaliana] dbj|BAD95354.1| receptor like protein [Arabidopsis thaliana] gb|AEE84563.1| PHD finger and bromo-adjacent homology domain-containing protein [Arabidopsis thaliana] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: ebs-bah-phd domain-containing protein 0.0
C-terminus
uagpf_v2_unigene18380 uagpf v2.0 641
AutoFact: ATP binding protein, putative n=1 Tax=Ricinus communis RepID=B9RYZ7_RICCO 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: atp binding 0.0
C-terminus
uagpf_v2_unigene18834 uagpf v2.0 414
AutoFact: RING-finger, DEAD-like helicase, PHD and SNF2 domain-containing protein n=1 Tax=Arabidopsis thaliana RepID=F4II36_ARATH 2.0e-27
FL-Next: tr=RING-finger, DEAD-like helicase, PHD and SNF2 domain-containing protein; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: snf2 super family 2.49511e-31
Internal
uagpf_v2_unigene19532 uagpf v2.0 2447
AutoFact: putative methyltransferase PMT2 [Arabidopsis thaliana] ref|NP_849710.1| putative methyltransferase PMT2 [Arabidopsis thaliana] sp|B9DFI7.2|PMT2_ARATH RecName: Full=Probable methyltransferase PMT2 gb|AAK59830.1| At1g26850/T2P11_4 [Arabidopsis thaliana] gb| 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: atp binding 0.0
Complete
uagpf_v2_unigene19867 uagpf v2.0 912
AutoFact: putative methyltransferase PMT11 [Arabidopsis thaliana] sp|O22285.1|PMTB_ARATH RecName: Full=Probable methyltransferase PMT11 gb|AAB87124.1| expressed protein [Arabidopsis thaliana] gb|AAK96646.1| At2g39750/T5I7.5 [Arabidopsis thaliana] gb|AAM70566.1| At2 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: probable methyltransferase pmt11-like 0.0
Putative Complete
uagpf_v2_unigene20224 uagpf v2.0 521
AutoFact: Pyruvate kinase n=2 Tax=Picea sitchensis RepID=A9NUL1_PICSI 0.0
FL-Next: sp=Pyruvate kinase; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: pyruvate kinase 0.0
N-terminus
uagpf_v2_unigene20429 uagpf v2.0 575
AutoFact: calmodulin-binding protein [Arabidopsis thaliana] gb|AAF28348.1| calmodulin-binding protein [Arabidopsis thaliana] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: aaa family atpase cdc48 subfamily 0.0
C-terminus
uagpf_v2_unigene20446 uagpf v2.0 867
AutoFact: calmodulin-binding protein [Arabidopsis thaliana] gb|AAF28348.1| calmodulin-binding protein [Arabidopsis thaliana] 0.0
Blast2go: aaa family atpase cdc48 subfamily 0.0
unknown
uagpf_v2_unigene20546 uagpf v2.0 959
AutoFact: Unassigned protein
Blast2go: prolyl 4-hydroxylase subunit alpha-1 0.0
Putative coding
uagpf_v2_unigene24998 uagpf v2.0 565
AutoFact: ARID/BRIGHT DNA-binding domain-containing protein (Fragment) n=1 Tax=Physcomitrella patens subsp. patens RepID=A9S710_PHYPA 0.0
FL-Next: tr=Putative uncharacterized protein; Selaginella moellendorffii (Spikemoss). 0.0
Blast2go: arid bright dna-binding domain-containing protein 0.0
C-terminus
uagpf_v2_unigene25357 uagpf v2.0 504
AutoFact: ATP binding protein, putative n=1 Tax=Ricinus communis RepID=B9RRE2_RICCO 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: ankyrin-like protein 0.0
Internal
uagpf_v2_unigene25506 uagpf v2.0 620
AutoFact: DNA binding protein, putative n=1 Tax=Ricinus communis RepID=B9RFB9_RICCO 2.0e-25
Blast2go: ring u-box domain-containing protein 8.79016e-28
unknown
uagpf_v2_unigene25628 uagpf v2.0 429
AutoFact: Whole genome shotgun sequence of line PN40024, scaffold_14.assembly12x (Fragment) n=1 Tax=Vitis vinifera RepID=E0CS00_VITVI 9.0e-29
FL-Next: tr=Putative uncharacterized protein At3g14740; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: protein 8.72244e-36
C-terminus
uagpf_v2_unigene25936 uagpf v2.0 524
AutoFact: WS0374.C21_B21 SS-B-N-22 Picea sitchensis cDNA clone WS0374_B21 3', mRNA sequence. 0.0
Blast2go: protein 0.0
unknown
uagpf_v2_unigene25951 uagpf v2.0 518
AutoFact: Unassigned protein
Blast2go: enhanced downy mildew 2 0.0
Coding
uagpf_v2_unigene25984 uagpf v2.0 328
AutoFact: cohesin loading factor subunit SCC2 [Arabidopsis thaliana] gb|ABQ12620.1| sister chromatid cohesion 2 [Arabidopsis thaliana] gb|AED92174.1| cohesin loading factor subunit SCC2 [Arabidopsis thaliana] 0.0
Blast2go: cohesin loading factor subunit scc2 0.0
unknown
uagpf_v2_unigene26309 uagpf v2.0 335
AutoFact: WS0374.C21_B21 SS-B-N-22 Picea sitchensis cDNA clone WS0374_B21 3', mRNA sequence. 0.0
Blast2go: protein 0.0
Coding
uagpf_v2_unigene26482 uagpf v2.0 347
AutoFact: homeobox protein HAT3.1 [Arabidopsis thaliana] sp|Q04996.3|HAT31_ARATH RecName: Full=Homeobox protein HAT3.1 dbj|BAC41784.1| putative homeobox protein HAT3.1 [Arabidopsis thaliana] gb|AAO64900.1| At3g19510 [Arabidopsis thaliana] gb|AEE76250.1| homeobox pr 0.0
Blast2go: homeobox protein 0.0
Coding

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain