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Assembly Name: uagpf v2.0

Name: Helicase, C-terminal

Term: IPR001650  Help

Source: InterPro from Sma3


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
uagpf_v2_unigene26261 uagpf v2.0 506
AutoFact: DEAD-box ATP-dependent RNA helicase 52B n=3 Tax=Oryza sativa RepID=RH52B_ORYSJ 0.0
FL-Next: sp=DEAD-box ATP-dependent RNA helicase 11; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: protein 0.0
Internal
uagpf_v2_unigene26570 uagpf v2.0 391
AutoFact: Dead box ATP-dependent RNA helicase, putative n=1 Tax=Ricinus communis RepID=B9SX92_RICCO 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: dead box atp-dependent rna 0.0
Internal
uagpf_v2_unigene26578 uagpf v2.0 373
AutoFact: DNA repair and transcription factor XPB1 (ISS) [Ostreococcus tauri] emb|CAL53063.1| DNA repair and transcription factor XPB1 (ISS) [Ostreococcus tauri] 0.0
Blast2go: protein 0.0
unknown
uagpf_v2_unigene26640 uagpf v2.0 333
AutoFact: Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein [Arabidopsis thaliana] ref|NP_194863.4| Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein [Arabidopsis thaliana] dbj|BAC43211.1| unknown protein [Arabidops 0.0
Blast2go: core-2 i-branching beta- -n-acetylglucosaminyltransferase family protein 0.0
unknown
uagpf_v2_unigene26735 uagpf v2.0 297
AutoFact: Dead box ATP-dependent RNA helicase, putative n=1 Tax=Ricinus communis RepID=B9RC60_RICCO 0.0
Blast2go: atp-dependent rna helicase 0.0
Putative coding
uagpf_v2_unigene26810 uagpf v2.0 445
AutoFact: [L] COG4581 Superfamily II RNA helicase 1.96182e-44
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: superkiller viralicidic activity 2-like 2-like 0.0
Internal
uagpf_v2_unigene26931 uagpf v2.0 353
AutoFact: putative U1 snRNP 70K protein [Trifolium pratense] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: u1 small nuclear ribonucleoprotein 70 kda-like 0.0
N-terminus
uagpf_v2_unigene27021 uagpf v2.0 724
AutoFact: PRP38_assoc multi-domain protein 3.0e-09
Coding
uagpf_v2_unigene27571 uagpf v2.0 434
AutoFact: DNA polymerase theta subunit [Arabidopsis thaliana] dbj|BAD93700.1| helicase and polymerase containing protein TEBICHI [Arabidopsis thaliana] gb|AEE86105.1| DNA polymerase theta subunit [Arabidopsis thaliana] 7.0e-09
FL-Next: tr=Predicted protein; subsp. trichocarpa). 0.0
Blast2go: DNA polymerase theta subunit 2.55406e-11
C-terminus
uagpf_v2_unigene27691 uagpf v2.0 376
AutoFact: Endoribonuclease Dicer homolog 1 n=4 Tax=Poaceae RepID=DCL1_ORYSJ 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: endoribonuclease dicer homolog 1-like 0.0
N-terminus
uagpf_v2_unigene27991 uagpf v2.0 371
AutoFact: DEAD-box ATP-dependent RNA helicase 26 [Arabidopsis thaliana] sp|Q9FNM7.2|RH26_ARATH RecName: Full=DEAD-box ATP-dependent RNA helicase 26 gb|AED91329.1| DEAD-box ATP-dependent RNA helicase 26 [Arabidopsis thaliana] 0.0
Blast2go: rna helicase 0.0
Coding
uagpf_v2_unigene28014 uagpf v2.0 416
AutoFact: chromodomain-helicase-DNA-binding protein-like protein [Oryza sativa Japonica Group] dbj|BAD30688.1| chromodomain-helicase-DNA-binding protein-like protein [Oryza sativa Japonica Group] 2.0e-17
Blast2go: chromodomain-helicase-dna-binding protein 6.78532e-28
unknown
uagpf_v2_unigene28241 uagpf v2.0 378
AutoFact: Chromatin remodeling complex subunit n=1 Tax=Populus trichocarpa RepID=B9HEW0_POPTR 0.0
Blast2go: chromatin remodeling complex subunit 0.0
unknown
uagpf_v2_unigene28279 uagpf v2.0 537
AutoFact: Helicase domain-containing protein n=4 Tax=Arabidopsis RepID=D7MLJ1_ARALL 0.0
FL-Next: sp=Probable pre-mRNA-splicing factor ATP-dependent RNA helicase; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: helicase domain-containing protein 0.0
Internal
uagpf_v2_unigene28318 uagpf v2.0 395
AutoFact: putative DNA helicase [Arabidopsis thaliana] 5.0e-37
Blast2go: dna helicase 1.4013e-45
unknown
uagpf_v2_unigene28416 uagpf v2.0 366
AutoFact: ATP-dependent RNA helicase, putative n=1 Tax=Ricinus communis RepID=B9R8Y0_RICCO 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: probable pre-mrna-splicing factor atp-dependent rna helicase-like 0.0
N-terminus
uagpf_v2_unigene28545 uagpf v2.0 514
AutoFact: Caldesmon multi-domain protein 7.0e-18
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: auxilin-related protein 2-like 0.0
Putative N-terminus
uagpf_v2_unigene28701 uagpf v2.0 662
AutoFact: putative helicase [Arabidopsis thaliana] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: transcription-repair-coupling factor-like 0.0
Putative Complete
uagpf_v2_unigene28964 uagpf v2.0 314
AutoFact: DEAD box protein P68 [Pisum sativum] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: protein 0.0
Internal
uagpf_v2_unigene28989 uagpf v2.0 372
AutoFact: putative U5 small nuclear ribonucleoprotein helicase [Arabidopsis thaliana] ref|NP_001185050.1| putative U5 small nuclear ribonucleoprotein helicase [Arabidopsis thaliana] gb|AAD30595.1|AC007369_5 Putative RNA helicase [Arabidopsis thaliana] gb|AEE30046.1 0.0
FL-Next: tr=Predicted protein; Physcomitrella patens subsp. patens (Moss). 0.0
Blast2go: u5 small nuclear ribonucleoprotein helicase 0.0
Internal

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain