Sustainpine_db
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Assembly Name: uagpf v2.0

Name: Helicase, C-terminal

Term: IPR001650  Help

Source: InterPro from Sma3


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
uagpf_v2_unigene12237 uagpf v2.0 677
AutoFact: DEAD-box ATP-dependent RNA helicase 2 n=6 Tax=BEP clade RepID=RH2_ORYSJ 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: nicotiana eukaryotic translation initiation factor 4a 0.0
N-terminus
uagpf_v2_unigene12636 uagpf v2.0 581
AutoFact: pfam00271, Helicase_C, Helicase conserved C-terminal domain 6.0e-16
Blast2go: helicase and zinc finger domain-containing protein 0.0
unknown
uagpf_v2_unigene12802 uagpf v2.0 694
AutoFact: Dead box ATP-dependent RNA helicase, putative n=1 Tax=Ricinus communis RepID=B9R8B1_RICCO 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: rna helicase like protein 0.0
Internal
uagpf_v2_unigene12888 uagpf v2.0 574
AutoFact: Dead box ATP-dependent RNA helicase, putative n=1 Tax=Ricinus communis RepID=B9SAD3_RICCO 0.0
Blast2go: dead box rna helicase 0.0
Coding
uagpf_v2_unigene12920 uagpf v2.0 460
AutoFact: FAP multi-domain protein 2.0e-18
Coding
uagpf_v2_unigene13226 uagpf v2.0 572
AutoFact: putative U5 small nuclear ribonucleoprotein helicase [Arabidopsis thaliana] ref|NP_001185050.1| putative U5 small nuclear ribonucleoprotein helicase [Arabidopsis thaliana] gb|AAD30595.1|AC007369_5 Putative RNA helicase [Arabidopsis thaliana] gb|AEE30046.1 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: u5 small nuclear ribonucleoprotein helicase 0.0
C-terminus
uagpf_v2_unigene13227 uagpf v2.0 452
AutoFact: Dead box ATP-dependent RNA helicase, putative n=1 Tax=Ricinus communis RepID=B9T0X5_RICCO 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: dead-box atp-dependent rna helicase 29-like 0.0
Internal
uagpf_v2_unigene13443 uagpf v2.0 696
AutoFact: SNF2 and helicase domain-containing protein [Arabidopsis thaliana] gb|AAC97224.1| putative helicase [Arabidopsis thaliana] gb|AAL24339.1| SNF2/RAD54 family (ETL1 subfamily) protein [Arabidopsis thaliana] gb|AAO00936.1| SNF2/RAD54 family (ETL1 subfamily) p 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: snf2 family dna-dependent atpase 0.0
Complete
uagpf_v2_unigene13459 uagpf v2.0 743
AutoFact: ATP-dependent RNA helicase, putative n=1 Tax=Ricinus communis RepID=B9S958_RICCO 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: probable atp-dependent rna helicase dhx35 0.0
Putative C-terminus
uagpf_v2_unigene13522 uagpf v2.0 1021
AutoFact: RecName: Full=DEAD-box ATP-dependent RNA helicase 9 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: dead-box atp-dependent rna helicase 53-like 0.0
Internal
uagpf_v2_unigene13575 uagpf v2.0 526
AutoFact: RNA helicase [Arabidopsis thaliana] gb|AAD39319.1|AC007258_8 Very similar to helicases [Arabidopsis thaliana] dbj|BAD44599.1| hypothetical protein [Arabidopsis thaliana] gb|AEE33616.1| RNA helicase [Arabidopsis thaliana] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: skiv2l2 protein 0.0
C-terminus
uagpf_v2_unigene14133 uagpf v2.0 668
AutoFact: ATP-dependent RNA helicase (ISS) [Ostreococcus tauri] emb|CAL55992.1| ATP-dependent RNA helicase (ISS) [Ostreococcus tauri] 0.0
Blast2go: protein 0.0
unknown
uagpf_v2_unigene14220 uagpf v2.0 496
AutoFact: FAP multi-domain protein 2.0e-17
Putative coding
uagpf_v2_unigene14399 uagpf v2.0 1787
AutoFact: DEAD-box ATP-dependent RNA helicase 40 [Arabidopsis thaliana] sp|Q9SQV1.1|RH40_ARATH RecName: Full=DEAD-box ATP-dependent RNA helicase 40 gb|AAF08584.1|AC011623_17 putative RNA helicase [Arabidopsis thaliana] gb|AEE74400.1| DEAD-box ATP-dependent RNA heli 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: dead-box atp-dependent rna helicase 14 0.0
C-terminus
uagpf_v2_unigene14702 uagpf v2.0 400
AutoFact: RecName: Full=DEAD-box ATP-dependent RNA helicase 13 dbj|BAA95778.1| ATP-dependent RNA helicase [Arabidopsis thaliana] 0.0
Blast2go: dead-box atp-dependent rna helicase 13 0.0
unknown
uagpf_v2_unigene14768 uagpf v2.0 1214
AutoFact: DEAD-box ATP-dependent RNA helicase 2 n=6 Tax=BEP clade RepID=RH2_ORYSJ 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: nicotiana eukaryotic translation initiation factor 4a 0.0
N-terminus
uagpf_v2_unigene15207 uagpf v2.0 501
AutoFact: Putative SWI/SNF related, matrix associated, actin dependent regulator of chromatin [Oryza sativa] dbj|BAB64747.1| putative DNA-dependent ATPase [Oryza sativa Japonica Group] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Internal
uagpf_v2_unigene15261 uagpf v2.0 577
AutoFact: DEAD-box ATP-dependent RNA helicase 52B n=3 Tax=Oryza sativa RepID=RH52B_ORYSJ 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: protein 0.0
Internal
uagpf_v2_unigene15306 uagpf v2.0 482
AutoFact: DEAD-box ATP-dependent RNA helicase 26 [Arabidopsis thaliana] sp|Q9FNM7.2|RH26_ARATH RecName: Full=DEAD-box ATP-dependent RNA helicase 26 gb|AED91329.1| DEAD-box ATP-dependent RNA helicase 26 [Arabidopsis thaliana] 0.0
Blast2go: rna helicase 0.0
unknown
uagpf_v2_unigene15689 uagpf v2.0 542
AutoFact: DEAD-box ATP-dependent RNA helicase 3 [Arabidopsis thaliana] gb|AAM26693.1| At5g26743 [Arabidopsis thaliana] gb|AAO42779.1| At5g26743 [Arabidopsis thaliana] gb|AED93564.1| DEAD-box ATP-dependent RNA helicase 3 [Arabidopsis thaliana] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: dead-box atp-dependent rna helicase chloroplastic-like 0.0
C-terminus

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain