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Assembly Name: uagpf v2.0

Name: WD40 repeat, conserved site

Term: IPR019775  Help

Source: InterPro from Sma3

UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
 Full-Length
uagpf_v2_unigene5692 uagpf v2.0 701
• AutoFact: Leucine Rich Repeat family protein n=28 Tax=Oryza RepID=Q2R2D5_ORYSJ 7.0e-23
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: protein kinase xa21 2.69671e-23
Internal
uagpf_v2_unigene5693 uagpf v2.0 622
• AutoFact: transducin/WD40 domain-containing protein [Arabidopsis thaliana] dbj|BAE44475.1| WD repeat protein [Arabidopsis thaliana] gb|AEE85686.1| transducin/WD40 domain-containing protein [Arabidopsis thaliana] 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: protein 0.0
C-terminus
uagpf_v2_unigene5773 uagpf v2.0 631
• AutoFact: WD-repeat protein, putative n=1 Tax=Ricinus communis RepID=B9SMF9_RICCO 1.4013e-45
• FL-Next: sp=Protein TOPLESS; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Blast2go: topless-related protein 4-like 0.0
Internal
uagpf_v2_unigene5786 uagpf v2.0 388
• AutoFact: Protein kinase [Medicago truncatula] 0.0
• Blast2go: protein kinase 0.0
Putative coding
uagpf_v2_unigene5793 uagpf v2.0 661
• AutoFact: Retrotransposon protein, putative, unclassified n=1 Tax=Oryza sativa Japonica Group RepID=Q2QXM6_ORYSJ 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: retrotransposon unclassified 0.0
Putative C-terminus
uagpf_v2_unigene5836 uagpf v2.0 262
• AutoFact: WD40 domain-containing protein [Arabidopsis thaliana] gb|AAU94425.1| At1g65030 [Arabidopsis thaliana] gb|AEE34317.1| WD40 domain-containing protein [Arabidopsis thaliana] 0.0
• Blast2go: p21-activated protein kinase-interacting protein 1-like 0.0
unknown
uagpf_v2_unigene5993 uagpf v2.0 370
• AutoFact: DNA damage-binding protein 2 [Arabidopsis thaliana] sp|Q6NQ88.1|DDB2_ARATH RecName: Full=Protein DAMAGED DNA-BINDING 2; AltName: Full=UV-damaged DNA-binding protein 2 gb|AAQ65193.1| At5g58760 [Arabidopsis thaliana] dbj|BAD42887.1| putative protein [Arabid 0.0
• Blast2go: protein damaged dna-binding 2 0.0
unknown
uagpf_v2_unigene6055 uagpf v2.0 978
• AutoFact: [R] COG2319 FOG: WD40 repeat 4.0e-07
• FL-Next: sp=Protein TOPLESS; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Blast2go: wd repeat-containing 0.0
C-terminus
uagpf_v2_unigene6062 uagpf v2.0 1546
• AutoFact: putative protein kinase APK1A [Trifolium pratense] 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: protein kinase apk1a 0.0
Putative C-terminus
uagpf_v2_unigene6069 uagpf v2.0 718
• AutoFact: Beta-galactosidase n=1 Tax=Persea americana RepID=Q0EDB0_PERAE 0.0
• FL-Next: sp=Beta-galactosidase; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: beta galactosidase 9 0.0
C-terminus
uagpf_v2_unigene6246 uagpf v2.0 597
• AutoFact: Nucleotide binding protein, putative n=1 Tax=Ricinus communis RepID=B9RDD1_RICCO 0.0
• FL-Next: tr=Predicted protein; subsp. trichocarpa). 0.0
• Blast2go: protein 0.0
C-terminus
uagpf_v2_unigene6265 uagpf v2.0 628
• AutoFact: Guanine nucleotide-binding protein subunit beta-like protein n=4 Tax=rosids RepID=GBLP_SOYBN 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: receptor of activated protein kinase c component of 40s small ribosomal subunit 0.0
C-terminus
uagpf_v2_unigene6272 uagpf v2.0 787
• AutoFact: WD-40 repeat protein-like [Oryza sativa Japonica Group] gb|EAZ41606.1| hypothetical protein OsJ_26138 [Oryza sativa Japonica Group] 0.0
• FL-Next: Isoform 1 of Topless-related protein 1 OS=Arabidopsis thaliana GN=TPR1 0.0
• Blast2go: wd repeat-containing 0.0
C-terminus
uagpf_v2_unigene6286 uagpf v2.0 733
• AutoFact: Eukaryotic translation initiation factor 3 subunit, putative n=1 Tax=Ricinus communis RepID=B9S7C0_RICCO 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: protein 0.0
N-terminus
uagpf_v2_unigene6312 uagpf v2.0 728
• AutoFact: cellulose synthase 6 [Populus tremuloides] 0.0
• Blast2go: cellulose synthase 0.0
unknown
uagpf_v2_unigene6358 uagpf v2.0 1777
• AutoFact: coatomer subunit alpha-1 [Arabidopsis thaliana] sp|Q94A40.2|COPA1_ARATH RecName: Full=Coatomer subunit alpha-1; AltName: Full=Alpha-coat protein 1; Short=Alpha-COP 1 gb|AAC28519.1| Strong similarity to coatamer alpha subunit (HEPCOP) homolog gb|U24105 fro 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Putative C-terminus
uagpf_v2_unigene6433 uagpf v2.0 568
• AutoFact: Eukaryotic translation initiation factor 3 subunit, putative n=1 Tax=Ricinus communis RepID=B9S7C0_RICCO 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: protein 0.0
C-terminus
uagpf_v2_unigene6437 uagpf v2.0 560
• AutoFact: BHLH transcription factor PTF1-like protein n=1 Tax=Oryza sativa Japonica Group RepID=Q6EPZ6_ORYSJ 9.94922e-44
• Blast2go: transcription factor bhlh66-like 0.0
unknown
uagpf_v2_unigene6600 uagpf v2.0 691
• AutoFact: transducin/WD40 domain-containing protein [Arabidopsis thaliana] dbj|BAB02018.1| WD40-repeat protein [Arabidopsis thaliana] gb|AAL32514.1| WD40-repeat protein [Arabidopsis thaliana] gb|AAM47943.1| WD40-repeat protein [Arabidopsis thaliana] gb|AEE76041.1| 0.0
• Blast2go: 66 kda stress protein 0.0
unknown
uagpf_v2_unigene6651 uagpf v2.0 550
• AutoFact: F-box family protein n=2 Tax=Populus trichocarpa RepID=B9IPW7_POPTR 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: f-box family protein 0.0
C-terminus

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain