Sustainpine_db
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Assembly Name: uagpf v2.0

Name: WD40 repeat, conserved site

Term: IPR019775  Help

Source: InterPro from Sma3


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
uagpf_v2_unigene4676 uagpf v2.0 754
AutoFact: Serine hydroxymethyltransferase (Fragment) n=2 Tax=Vitis vinifera RepID=D7SZT0_VITVI 0.0
Blast2go: serine hydroxymethyltransferase 0.0
Putative coding
uagpf_v2_unigene4688 uagpf v2.0 458
AutoFact: MIP-T3 multi-domain protein 8.0e-16
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Blast2go: f-box-like wd repeat-containing protein tbl1xr1-like 0.0
N-terminus
uagpf_v2_unigene4706 uagpf v2.0 407
AutoFact: TLD-domain containing nucleolar protein [Arabidopsis thaliana] dbj|BAB08890.1| unnamed protein product [Arabidopsis thaliana] gb|AED94452.1| TLD-domain containing nucleolar protein [Arabidopsis thaliana] 0.0
FL-Next: tr=Predicted protein; subsp. trichocarpa). 0.0
Blast2go: protein 0.0
Internal
uagpf_v2_unigene4730 uagpf v2.0 380
AutoFact: transducin/WD40 domain-containing protein [Arabidopsis thaliana] emb|CAB41313.1| putative protein [Arabidopsis thaliana] gb|AAP37694.1| At3g51930 [Arabidopsis thaliana] dbj|BAF00246.1| hypothetical protein [Arabidopsis thaliana] gb|AEE78864.1| transducin/ 1.0e-30
FL-Next: tr=Predicted protein; subsp. trichocarpa). 0.0
Blast2go: protein 3.54662e-38
C-terminus
uagpf_v2_unigene4786 uagpf v2.0 1093
AutoFact: transducin/WD-40 repeat-containing protein [Arabidopsis thaliana] gb|AAK50091.1|AF372951_1 At1g78070/F28K19_28 [Arabidopsis thaliana] gb|AAN72242.1| At1g78070/F28K19_28 [Arabidopsis thaliana] gb|AEE36064.1| transducin/WD-40 repeat-containing protein [Arab 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
C-terminus
uagpf_v2_unigene4798 uagpf v2.0 610
AutoFact: chromatin remodeling factor DDM1a [Oryza sativa Japonica Group] dbj|BAF34944.1| chromatin remodeling factor DDM1a [Oryza sativa Japonica Group] gb|EEE69802.1| hypothetical protein OsJ_29535 [Oryza sativa Japonica Group] 0.0
FL-Next: sp=ATP-dependent DNA helicase DDM1; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: chromatin remodeling complex subunit 0.0
Putative N-terminus
uagpf_v2_unigene4807 uagpf v2.0 464
AutoFact: transducin/WD-40 repeat-containing protein [Arabidopsis thaliana] gb|AAC27402.2| expressed protein [Arabidopsis thaliana] gb|AAM65204.1| unknown [Arabidopsis thaliana] dbj|BAC42145.1| unknown protein [Arabidopsis thaliana] gb|AAO63858.1| putative G-protei 0.0
Blast2go: wd repeat-containing protein 55-like 0.0
unknown
uagpf_v2_unigene4888 uagpf v2.0 827
AutoFact: WD40 domain-containing protein [Arabidopsis thaliana] gb|AAU94425.1| At1g65030 [Arabidopsis thaliana] gb|AEE34317.1| WD40 domain-containing protein [Arabidopsis thaliana] 0.0
Blast2go: p21-activated protein kinase-interacting protein 1-like 0.0
unknown
uagpf_v2_unigene4920 uagpf v2.0 762
AutoFact: Nucleotide binding protein, putative n=1 Tax=Ricinus communis RepID=B9SA71_RICCO 0.0
Blast2go: retinoblastoma-binding protein 5-like 0.0
unknown
uagpf_v2_unigene4940 uagpf v2.0 1062
AutoFact: Retrotransposon protein, putative, unclassified n=1 Tax=Oryza sativa Japonica Group RepID=Q2QXM6_ORYSJ 0.0
FL-Next: tr=Reverse transcriptase; Picea glauca (White spruce) (Pinus glauca). 0.0
Blast2go: retrotransposon unclassified 0.0
C-terminus
uagpf_v2_unigene4965 uagpf v2.0 742
AutoFact: protein kinase APK1B [Arabidopsis thaliana] gb|AEC08191.1| protein kinase APK1B [Arabidopsis thaliana] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: protein kinase 0.0
C-terminus
uagpf_v2_unigene5177 uagpf v2.0 684
AutoFact: putative WD-40 repeat protein [Trifolium pratense] 0.0
FL-Next: sp=Ribosome biogenesis protein BOP1 homolog; Chlamydomonas reinhardtii (Chlamydomonas smithii). 0.0
Blast2go: ribosome biogenesis protein bop1 homolog 0.0
C-terminus
uagpf_v2_unigene5332 uagpf v2.0 371
AutoFact: putative helicase [Arabidopsis thaliana] 0.0
Blast2go: dna helicase ino80-like 0.0
unknown
uagpf_v2_unigene5367 uagpf v2.0 423
AutoFact: Unassigned protein
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: protein 8.24703e-21
N-terminus
uagpf_v2_unigene5457 uagpf v2.0 562
AutoFact: drought-sensitive 1 protein [Arabidopsis thaliana] gb|AAF14658.1|AC011713_6 Contains similarity to gb|AF092102 G-protein beta subunit git5p from Schizosaccharomyces pombe and contains 2 PF|00400WD domain, G-beta repeat domains [Arabidopsis thaliana] gb|AE 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: wd repeat-containing protein 76-like 0.0
C-terminus
uagpf_v2_unigene5477 uagpf v2.0 649
AutoFact: Unassigned protein
FL-Next: tr=Putative uncharacterized protein F24B22.150; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: protein 6.33686e-17
N-terminus
uagpf_v2_unigene5528 uagpf v2.0 652
AutoFact: glycinamide ribonucleotide synthetase [Nicotiana tabacum] 0.0
FL-Next: sp=Phosphoribosylamine--glycine ligase, chloroplastic; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: phosphoribosylamine--glycine ligase 0.0
C-terminus
uagpf_v2_unigene5595 uagpf v2.0 820
AutoFact: pfam00400, WD40, WD domain, G-beta repeat 3.0e-07
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: transcriptional corepressor leunig 0.0
Complete
uagpf_v2_unigene5632 uagpf v2.0 736
AutoFact: O-FucT domain containing protein 0.0
FL-Next: tr=Predicted protein; subsp. trichocarpa). 0.0
Blast2go: duf246 domain-containing protein at1g04910-like 0.0
C-terminus
uagpf_v2_unigene5678 uagpf v2.0 632
AutoFact: O-FucT domain containing protein 0.0
Blast2go: duf246 domain-containing protein at1g04910-like 0.0
unknown

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain