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Assembly Name: uagpf v2.0

Name: WD40 repeat, conserved site

Term: IPR019775  Help

Source: InterPro from Sma3


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
uagpf_v2_unigene3104 uagpf v2.0 693
AutoFact: Nucleotide binding protein, putative n=1 Tax=Ricinus communis RepID=B9SA71_RICCO 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: retinoblastoma-binding protein 5-like 0.0
N-terminus
uagpf_v2_unigene3137 uagpf v2.0 410
AutoFact: Cholesterol transport protein n=1 Tax=Populus trichocarpa RepID=B9HPX9_POPTR 0.0
FL-Next: tr=Putative uncharacterized protein; Ricinus communis (Castor bean). 0.0
Blast2go: niemann-pick c1 protein 0.0
Internal
uagpf_v2_unigene3176 uagpf v2.0 636
AutoFact: Hedgehog receptor, putative n=1 Tax=Ricinus communis RepID=B9R8N7_RICCO 5.0e-40
FL-Next: tr=Hedgehog receptor, putative; Ricinus communis (Castor bean). 0.0
Blast2go: niemann-pick c1 9.23554e-40
Internal
uagpf_v2_unigene3187 uagpf v2.0 864
AutoFact: Unassigned protein
FL-Next: sp=Topless-related protein 4; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: protein 0.0
C-terminus
uagpf_v2_unigene3244 uagpf v2.0 583
AutoFact: THO complex subunit 6 [Arabidopsis thaliana] sp|Q8L4M1.1|DWA1_ARATH RecName: Full=WD repeat-containing protein DWA1; AltName: Full=Protein DWD HYPERSENSITIVE TO ABA 1 gb|AAM20569.1| putative WD-40 repeat protein [Arabidopsis thaliana] gb|AAM91279.1| putat 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: wd-40 repeat protein 0.0
C-terminus
uagpf_v2_unigene3246 uagpf v2.0 1732
AutoFact: Serine hydroxymethyltransferase n=2 Tax=Picea sitchensis RepID=A9NUX0_PICSI 0.0
FL-Next: sp=Serine hydroxymethyltransferase; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: serine hydroxymethyltransferase 0.0
Complete
uagpf_v2_unigene3339 uagpf v2.0 803
AutoFact: transducin/WD40 domain-containing protein [Arabidopsis thaliana] dbj|BAB02018.1| WD40-repeat protein [Arabidopsis thaliana] gb|AAL32514.1| WD40-repeat protein [Arabidopsis thaliana] gb|AAM47943.1| WD40-repeat protein [Arabidopsis thaliana] gb|AEE76041.1| 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: 66 kda stress protein 0.0
Putative C-terminus
uagpf_v2_unigene3351 uagpf v2.0 690
AutoFact: UVB-resistance protein UVR8 [Arabidopsis thaliana] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: rcc1 and btb domain-containing protein 0.0
C-terminus
uagpf_v2_unigene3411 uagpf v2.0 415
AutoFact: Serine-threonine protein kinase, plant-type, putative n=1 Tax=Ricinus communis RepID=B9RH25_RICCO 2.0e-24
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: protein 5.10698e-28
Putative N-terminus
uagpf_v2_unigene3421 uagpf v2.0 551
AutoFact: DYW8 protein (Fragment) n=1 Tax=Arabidopsis thaliana RepID=Q9M4P5_ARATH 2.0e-14
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: pentatricopeptide repeat-containing protein 2.485e-19
Putative N-terminus
uagpf_v2_unigene3441 uagpf v2.0 532
AutoFact: putative alpha-glucanotransferase [Bacteroides fragilis NCTC 9343] emb|CAH09301.1| putative alpha-glucanotransferase [Bacteroides fragilis NCTC 9343] 0.0
FL-Next: sp=4-alpha-glucanotransferase DPE2; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: 4-alpha-glucanotransferase 0.0
Internal
uagpf_v2_unigene3545 uagpf v2.0 426
AutoFact: Beta-galactosidase (Fragment) n=2 Tax=Vitis vinifera RepID=D7U5K7_VITVI 3.0e-25
FL-Next: sp=Beta-galactosidase; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: beta-galactosidase 1.06303e-28
N-terminus
uagpf_v2_unigene3591 uagpf v2.0 405
AutoFact: Transcriptional corepressor LEUNIG n=1 Tax=Arabidopsis thaliana RepID=F4JUD2_ARATH 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: transcriptional corepressor leunig 0.0
Putative N-terminus
uagpf_v2_unigene3623 uagpf v2.0 518
AutoFact: [R] COG2319 FOG: WD40 repeat 2.0e-10
Blast2go: protein 0.0
unknown
uagpf_v2_unigene3738 uagpf v2.0 630
AutoFact: Beta-galactosidase n=1 Tax=Picea sitchensis RepID=A9NUR2_PICSI 0.0
FL-Next: sp=Beta-galactosidase; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: beta-galactosidase 8-like 0.0
Internal
uagpf_v2_unigene3759 uagpf v2.0 656
AutoFact: transducin/WD40 domain-containing protein [Arabidopsis thaliana] emb|CAB87620.1| putative protein [Arabidopsis thaliana] gb|AAM64344.1| unknown [Arabidopsis thaliana] gb|ABF85783.1| At5g14530 [Arabidopsis thaliana] gb|AED92044.1| transducin/WD40 domain-co 0.0
FL-Next: tr=Putative uncharacterized protein; Zea mays (Maize). 0.0
Blast2go: set1 complex component swd2 0.0
C-terminus
uagpf_v2_unigene3770 uagpf v2.0 350
AutoFact: Endoglucanase 8 n=2 Tax=Arabidopsis RepID=GUN8_ARATH 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: glycosyl hydrolase family 9 protein 0.0
N-terminus
uagpf_v2_unigene3889 uagpf v2.0 865
AutoFact: armadillo/beta-catenin-like repeat-containing protein [Arabidopsis thaliana] emb|CAC01878.1| putative protein [Arabidopsis thaliana] gb|AAM13237.1| putative protein [Arabidopsis thaliana] gb|AAM67181.1| unknown [Arabidopsis thaliana] gb|AAN65128.1| putati 0.0
Blast2go: protein 0.0
unknown
uagpf_v2_unigene3933 uagpf v2.0 619
AutoFact: Ubiquitin-protein ligase, putative n=1 Tax=Ricinus communis RepID=B9SWC2_RICCO 0.0
Blast2go: f-box family protein 0.0
unknown
uagpf_v2_unigene3992 uagpf v2.0 1271
AutoFact: WD repeat-containing protein 5 [Danio rerio] gb|AAH52124.1| Wdr5 protein [Danio rerio] gb|AAH66729.1| Wdr5 protein [Danio rerio] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: wd40 repeat compass complex protein 0.0
Putative Complete

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain