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Assembly Name: uagpf v2.0

Name: WD40 repeat, conserved site

Term: IPR019775  Help

Source: InterPro from Sma3


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
uagpf_v2_unigene46934 uagpf v2.0 222
AutoFact: WD-repeat protein, putative 0.0
FL-Next: tr=Predicted protein; subsp. trichocarpa). 0.0
Blast2go: protein 0.0
N-terminus
uagpf_v2_unigene47003 uagpf v2.0 441
AutoFact: Zinc finger CCCH domain-containing protein 17 n=4 Tax=Oryza sativa RepID=C3H17_ORYSJ 8.0e-24
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: zinc finger ccch domain-containing protein 63 7.22396e-30
C-terminus
uagpf_v2_unigene47078 uagpf v2.0 268
AutoFact: WD40 repeat protein [Ipomoea purpurea] dbj|BAE94399.1| WD40 repeat protein [Ipomoea nil] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: protein 0.0
Internal
uagpf_v2_unigene47093 uagpf v2.0 278
AutoFact: Ubiquitin-activating enzyme E1 n=2 Tax=Selaginella moellendorffii RepID=D8T5S9_SELML 3.0e-08
FL-Next: sp=Ubiquitin-activating enzyme E1 1; Triticum aestivum (Wheat). 0.0
Blast2go: ubiquitin-activating enzyme 8.31406e-10
N-terminus
uagpf_v2_unigene47119 uagpf v2.0 413
AutoFact: Unassigned protein
Blast2go: protein 6.39085e-18
unknown
uagpf_v2_unigene47157 uagpf v2.0 316
AutoFact: Pentatricopeptide repeat protein (Fragment) n=1 Tax=Cycas revoluta RepID=B3U1U9_CYCRE 1.0e-33
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: pentatricopeptide repeat protein 1.63952e-43
Internal
uagpf_v2_unigene47168 uagpf v2.0 349
AutoFact: putative protein phosphatase 2C 4 [Arabidopsis thaliana] sp|Q9LQN6.1|P2C04_ARATH RecName: Full=Probable protein phosphatase 2C 4; Short=AtPP2C04; AltName: Full=Protein POLTERGEIST-LIKE 5; AltName: Full=Protein phosphatase 2C PLL5; Short=PP2C PLL5 gb|AAF75 0.0
FL-Next: sp=Probable protein phosphatase 2C 4; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: protein 0.0
N-terminus
uagpf_v2_unigene47221 uagpf v2.0 268
AutoFact: transducin/WD-40 repeat-containing protein [Arabidopsis thaliana] gb|ABH04482.1| At2g16405 [Arabidopsis thaliana] gb|AEC06494.1| transducin/WD-40 repeat-containing protein [Arabidopsis thaliana] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: wd repeat-containing protein 13-like 0.0
Putative N-terminus
uagpf_v2_unigene47395 uagpf v2.0 162
AutoFact: pentatricopeptide repeat-containing protein [Arabidopsis thaliana] sp|Q9LNU6.2|PPR53_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g20230 gb|AEE29953.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] 5.0e-25
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: at1g74600-like protein 1.42357e-33
N-terminus
uagpf_v2_unigene47408 uagpf v2.0 386
AutoFact: Unassigned protein
FL-Next: tr=Putative uncharacterized protein; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: transducin wd40 domain-containing protein 0.0
Internal
uagpf_v2_unigene47477 uagpf v2.0 391
AutoFact: Pentatricopeptide repeat-containing protein, putative n=1 Tax=Ricinus communis RepID=B9SKC9_RICCO 1.0e-30
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: pentatricopeptide repeat-containing protein 0.0
Internal
uagpf_v2_unigene47568 uagpf v2.0 268
AutoFact: Unassigned protein
Blast2go: protein 7.8743e-13
Putative coding
uagpf_v2_unigene47664 uagpf v2.0 262
AutoFact: transducin/WD40 domain-containing protein [Arabidopsis thaliana] gb|AAK76712.1| unknown protein [Arabidopsis thaliana] gb|AAM45004.1| unknown protein [Arabidopsis thaliana] gb|AED97944.1| transducin/WD40 domain-containing protein [Arabidopsis thaliana] 0.0
FL-Next: tr=WD-repeat protein; Carica papaya (Papaya). 0.0
Blast2go: wd repeat domain-containing protein 83-like 0.0
N-terminus
uagpf_v2_unigene47782 uagpf v2.0 422
AutoFact: [R] COG2319 FOG: WD40 repeat 3.0e-05
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Blast2go: bromodomain and wd repeat-containing protein 0.0
Internal
uagpf_v2_unigene47788 uagpf v2.0 341
AutoFact: Periodic tryptophan protein-associated region; WD40-like [Medicago truncatula] 0.0
FL-Next: tr=JHL25H03.15 protein; Jatropha curcas. 0.0
Blast2go: periodic tryptophan protein 2-like 0.0
Internal
uagpf_v2_unigene47811 uagpf v2.0 357
AutoFact: Unassigned protein
FL-Next: tr=Reverse transcriptase; Picea glauca (White spruce) (Pinus glauca). 0.0
Blast2go: retrotransposon like protein 0.0
C-terminus
uagpf_v2_unigene47819 uagpf v2.0 371
AutoFact: O-fucosyltransferase family protein [Arabidopsis thaliana] gb|AAQ89634.1| At1g14020 [Arabidopsis thaliana] dbj|BAF01665.1| growth regulator like protein [Arabidopsis thaliana] dbj|BAF01818.1| growth regulator like protein [Arabidopsis thaliana] gb|AEE2909 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: duf246 domain-containing protein at1g04910-like 0.0
Internal
uagpf_v2_unigene47862 uagpf v2.0 336
AutoFact: putative transducin / WD-40 repeat protein [Oryza sativa Japonica Group] 0.0
Blast2go: ribosome biogenesis protein bop1 homolog 0.0
Coding
uagpf_v2_unigene47893 uagpf v2.0 250
AutoFact: [R] COG2319 FOG: WD40 repeat 5.0e-19
Blast2go: beach domain-containing protein lvsa-like 0.0
unknown
uagpf_v2_unigene47903 uagpf v2.0 272
AutoFact: SNF2 family DNA-dependent ATPase (Fragment) n=1 Tax=Physcomitrella patens subsp. patens RepID=A9TTS1_PHYPA 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: chromodomain-helicase-dna-binding protein 2-like 0.0
Internal

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain