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Assembly Name: uagpf v2.0

Name: WD40 repeat, conserved site

Term: IPR019775  Help

Source: InterPro from Sma3


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
uagpf_v2_unigene9907 uagpf v2.0 340
AutoFact: Lissencephaly type-1-like homology motif; CTLH, C-terminal to LisH motif; Nitrous oxide reductase, N-terminal; WD40-like; Quinonprotein alcohol dehydrogenase-like n=1 Tax=Medicago truncatula RepID=Q2HW32_MEDTR 0.0
FL-Next: sp=Topless-related protein 3; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: topless-related protein 3 0.0
Internal
uagpf_v2_unigene9938 uagpf v2.0 337
AutoFact: Pyridoxal phosphate-dependent transferase domain-containing protein [Arabidopsis thaliana] gb|AAG12531.1|AC015446_12 Similar to Allinase [Arabidopsis thaliana] gb|AEE31667.1| Pyridoxal phosphate-dependent transferase domain-containing protein [Arabidopsis 1.0e-12
FL-Next: sp=Tryptophan aminotransferase-related protein 4; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: tryptophan aminotransferase-related protein 4-like 1.63407e-19
Internal
uagpf_v2_unigene9995 uagpf v2.0 179
AutoFact: WD-40 repeat protein-like [Oryza sativa Japonica Group] gb|EAZ41606.1| hypothetical protein OsJ_26138 [Oryza sativa Japonica Group] 0.0
Blast2go: topless-related protein 4-like 0.0
unknown
uagpf_v2_unigene10038 uagpf v2.0 936
AutoFact: protein kinase family protein [Arabidopsis thaliana] ref|NP_001190331.1| protein kinase family protein [Arabidopsis thaliana] gb|ABE66165.1| protein kinase family protein [Arabidopsis thaliana] gb|AED92585.1| protein kinase family protein [Arabidopsis tha 0.0
Blast2go: protein kinase 0.0
Coding
uagpf_v2_unigene10089 uagpf v2.0 312
AutoFact: pentatricopeptide repeat-containing protein [Arabidopsis thaliana] sp|Q9SVP7.2|PP307_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g13650 gb|AEE83309.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] 8.0e-28
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: pentatricopeptide repeat-containing protein 2.04309e-41
Internal
uagpf_v2_unigene10092 uagpf v2.0 679
AutoFact: Receptor-like kinase n=1 Tax=Marchantia polymorpha RepID=A7VM23_MARPO 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: protein 0.0
Internal
uagpf_v2_unigene10114 uagpf v2.0 371
AutoFact: Pentatricopeptide repeat protein 65 n=2 Tax=Funariaceae RepID=F5CAD8_FUNHY 7.00005e-41
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: pentatricopeptide repeat-containing protein 0.0
Internal
uagpf_v2_unigene10116 uagpf v2.0 439
AutoFact: transducin/WD-40 repeat-containing protein [Arabidopsis thaliana] gb|ABH04482.1| At2g16405 [Arabidopsis thaliana] gb|AEC06494.1| transducin/WD-40 repeat-containing protein [Arabidopsis thaliana] 6.0e-24
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: transducin family protein 2.03456e-30
C-terminus
uagpf_v2_unigene10234 uagpf v2.0 415
AutoFact: Unassigned protein
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Internal
uagpf_v2_unigene10332 uagpf v2.0 297
AutoFact: iy83d12.g1 Cycas ovule - normalized (NYBG) Cycas rumphii cDNA 3', mRNA sequence. 6.0e-20
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: pentatricopeptide repeat-containing protein at3g23330-like 6.1958e-19
C-terminus
uagpf_v2_unigene10350 uagpf v2.0 505
AutoFact: Topless-related protein 2 n=2 Tax=Arabidopsis RepID=TPR2_ARATH 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: protein 0.0
Internal
uagpf_v2_unigene10406 uagpf v2.0 1603
AutoFact: Protein arginine n-methyltransferase, putative n=1 Tax=Ricinus communis RepID=B9RT51_RICCO 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: histone-arginine methyltransferase carm1 0.0
Putative Complete
uagpf_v2_unigene10408 uagpf v2.0 666
AutoFact: transducin/WD40 domain-containing protein [Arabidopsis thaliana] gb|AAK92820.1| unknown protein [Arabidopsis thaliana] gb|AAL08286.1| AT4g18900/F13C5_70 [Arabidopsis thaliana] gb|AAM44990.1| unknown protein [Arabidopsis thaliana] gb|AEE84104.1| transducin 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: transducin wd40 domain-containing protein 0.0
Complete
uagpf_v2_unigene10474 uagpf v2.0 596
AutoFact: Unassigned protein
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Internal
uagpf_v2_unigene10525 uagpf v2.0 368
AutoFact: Integrase n=1 Tax=Silene latifolia RepID=Q8S942_SILLA 3.0e-19
Blast2go: pentatricopeptide repeat-containing protein 6.36815e-22
unknown
uagpf_v2_unigene10552 uagpf v2.0 553
AutoFact: Unassigned protein
FL-Next: Isoform 1 of Topless-related protein 1 OS=Arabidopsis thaliana GN=TPR1 0.0
Blast2go: wd repeat-containing 1.62971e-42
Internal
uagpf_v2_unigene10568 uagpf v2.0 376
AutoFact: Phosphoprotein phosphatase, putative n=1 Tax=Ricinus communis RepID=B9RA78_RICCO 0.0
FL-Next: tr=Putative uncharacterized protein; Zea mays (Maize). 0.0
Blast2go: propyzamide-htpersensitive 1 0.0
Internal
uagpf_v2_unigene10608 uagpf v2.0 285
AutoFact: Unassigned protein
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Internal
uagpf_v2_unigene10655 uagpf v2.0 125
AutoFact: U3 small nucleolar RNA-interacting protein, putative n=1 Tax=Ricinus communis RepID=B9S0S6_RICCO 6.0e-09
FL-Next: tr=Predicted protein; subsp. trichocarpa). 0.0
Blast2go: u3 small nucleolar rna-interacting 1.52841e-11
Internal
uagpf_v2_unigene10674 uagpf v2.0 1368
AutoFact: WD-repeat protein, putative n=1 Tax=Ricinus communis RepID=B9S411_RICCO 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: wd40 repeat compass complex protein 0.0
Complete

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain