Sustainpine_db
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Assembly Name: biogeco2 v2.0

Name: transmembrane protein

Source: Description from Blast2go


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
biog2_v2.0_unigene1498 biogeco2 v2.0 476
AutoFact: UPF0016 protein 5 [Arabidopsis thaliana] sp|Q9SX28.1|GDT15_ARATH RecName: Full=GDT1-like protein 5 gb|AAD49978.1|AC008075_11 Is a member of PF|01169 Uncharacterized (transmembrane domain) protein family [Arabidopsis thaliana] dbj|BAC43336.1| putative tran 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: transmembrane protein 0.0
N-terminus
biog2_v2.0_unigene3389 biogeco2 v2.0 384
AutoFact: UPF0016 protein 5 [Arabidopsis thaliana] sp|Q9SX28.1|GDT15_ARATH RecName: Full=GDT1-like protein 5 gb|AAD49978.1|AC008075_11 Is a member of PF|01169 Uncharacterized (transmembrane domain) protein family [Arabidopsis thaliana] dbj|BAC43336.1| putative tran 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: transmembrane protein 0.0
C-terminus
biog2_v2.0_unigene3621 biogeco2 v2.0 448
AutoFact: WS02836.CR_K07 SS-IB-A-FL-13 Picea sitchensis cDNA clone WS02836_K07 3', mRNA sequence. 0.0
FL-Next: tr=Putative uncharacterized protein; Selaginella moellendorffii (Spikemoss). 0.0
Blast2go: transmembrane protein 0.0
C-terminus
biog2_v2.0_unigene4699 biogeco2 v2.0 748
AutoFact: Rab5-interacting family protein [Arabidopsis thaliana] gb|AAK32862.1|AF361850_1 AT5g49540/K6M13_9 [Arabidopsis thaliana] gb|AAM91062.1| AT5g49540/K6M13_9 [Arabidopsis thaliana] gb|AED95827.1| Rab5-interacting family protein [Arabidopsis thaliana] 6.0e-26
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: transmembrane protein 0.0
Putative Complete
biog2_v2.0_unigene10540 biogeco2 v2.0 386
AutoFact: TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein [Arabidopsis thaliana] gb|AAR24215.1| At1g35180 [Arabidopsis thaliana] gb|AAU05502.1| At3g16870 [Arabidopsis thaliana] gb|AEE31763.1| TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containi 1.0e-11
FL-Next: tr=Putative uncharacterized protein; Ricinus communis (Castor bean). 0.0
Blast2go: transmembrane protein 8.39774e-16
C-terminus
biog2_v2.0_unigene10669 biogeco2 v2.0 340
AutoFact: DUF962 domain containing protein 1.0e-33
Blast2go: transmembrane protein 0.0
unknown
biog2_v2.0_unigene11429 biogeco2 v2.0 174
AutoFact: UPF0016 protein 5 [Arabidopsis thaliana] sp|Q9SX28.1|GDT15_ARATH RecName: Full=GDT1-like protein 5 gb|AAD49978.1|AC008075_11 Is a member of PF|01169 Uncharacterized (transmembrane domain) protein family [Arabidopsis thaliana] dbj|BAC43336.1| putative tran 0.0
Blast2go: transmembrane protein 0.0
unknown
biog2_v2.0_unigene12522 biogeco2 v2.0 264
AutoFact: WS02836.CR_K07 SS-IB-A-FL-13 Picea sitchensis cDNA clone WS02836_K07 3', mRNA sequence. 0.0
Blast2go: transmembrane protein 0.0
unknown
biog2_v2.0_unigene12900 biogeco2 v2.0 512
AutoFact: DUF778 domain containing protein 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: transmembrane protein 0.0
N-terminus

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain